Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00603 ATGATTTTATTTTTTCCTGTTCTTGTACTTAGATTAGTTTTGTTTCCCGTAAGAGCATGTCGAAAATGTATGTCAGGTTGGTTGAATAATCAGCGTATCATTCAATATATTAAAGGAAAGATCTTAGATCCACTTCAAGTGAACTGTCCAATCTCTCATGTGAGAGGACAAGTTGATATGGTTTCTTCACAGGAAAGTGCAGATGGTTGTGTTTCTTCTGATGAATTGCAGCAGAAACAAAGCTTTGATTCTGAAAATGCCAAGTCTCAGCAGATTTTGGATGAGAATATTCATAACCCCCAATCAGAGAAAGGCAGAAATACTGCCTCCTCAAAAATAGAAGCAGCAGTTCAAGAATCTGATGCTGCTGTCTCTCTGTCACAATCATATAGAGAAGGAAGCAAATGCTCTTTACCGTGTAAGAAAACGTTACGAAGTCCTAAATCTAGTCTCCTTTCCCTGCAATCCAGTGTGGAAGGAAGTTATCGGAAAATCAGGGAAGATGGATATAACTGGCGCAAGTATGGACAGAAACAAGTTAGGGGAAACAAATTCATAAGGAACTATTATAAATGTACAAGCCCCAACTGCCCTGCTAAAAAACAATTGGAGTGTTCGCACAATGGGCAGATAACAGATATTGTTTACTTTGGTCAACATGATCACCCTAAACCTCGTCCTGATGTCTCAAATGCTGTTCTTTTTGATGTGACCATAATCGAAGAAACTCCCAAAGTGCCTTTTTCAAAGATAGGAGCACAATCAGCAGTTGAGCATGGACCACCTCCCAGAGTTTTCTCAGGTGATAATGTGAAAGACATGCACTCCAGATCAACTAGTTTACTAAAGGACAAGGCTCATAAGGAGAGGGGTCTGGAGTCCAAACGGCGGAAGAAGGACAATGGTTATGCTGATCCATTATCAATTAAAAAGTCAACTGGTGAGCATCAAGTTGTCATTCAAACTCGAAGTGAGGTCGATATTGTTAATGATGGATACAGGTGGAGAAAATATGGGCAGAAACTAGTGAAAGGAAATGCAAATCCAAGGAGTTACTACAGGTGCTCAAGTCCTCTATGTCCAGCTAAAAAGCATGTAGAGAGGGCATCTTATGATGCAAAAGTTGTCATAACTACCTATGAGGAACAACATAACCATGATTTGCCTCCTACAAGGACTGTAACTCACAGCGTTGGAGCAAATGTCAATGCAATTACCGATCAAGCAGAGTCCAGAGAAAAGTCAATAAGTAACGCGGTTGAACTTAGTACCAGTGAAAATACGAGCTTACAACTGGATGTTAGGTCAGAGATACAACGAAGTTGTGAAAACAAAACTGGCTCAGAGGTGGGTGACGTGGTCATTCATCCTGCTGAGGACTCTGAAACTAGACCCCTTGAACAAGAGAAGCAAAATGGCAACTCTGAAAGTATCCCACAAGAATGTGATTCTGTTGGTACCGATGGCAAAGTTCATTCCTCTACAACTAATGAAAATGTGAATTGTGGTGACAGAAGAACACAATAA 1527 0.4041 MILFFPVLVLRLVLFPVRACRKCMSGWLNNQRIIQYIKGKILDPLQVNCPISHVRGQVDMVSSQESADGCVSSDELQQKQSFDSENAKSQQILDENIHNPQSEKGRNTASSKIEAAVQESDAAVSLSQSYREGSKCSLPCKKTLRSPKSSLLSLQSSVEGSYRKIREDGYNWRKYGQKQVRGNKFIRNYYKCTSPNCPAKKQLECSHNGQITDIVYFGQHDHPKPRPDVSNAVLFDVTIIEETPKVPFSKIGAQSAVEHGPPPRVFSGDNVKDMHSRSTSLLKDKAHKERGLESKRRKKDNGYADPLSIKKSTGEHQVVIQTRSEVDIVNDGYRWRKYGQKLVKGNANPRSYYRCSSPLCPAKKHVERASYDAKVVITTYEEQHNHDLPPTRTVTHSVGANVNAITDQAESREKSISNAVELSTSENTSLQLDVRSEIQRSCENKTGSEVGDVVIHPAEDSETRPLEQEKQNGNSESIPQECDSVGTDGKVHSSTTNENVNCGDRRTQ* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00603 508 FunFam WRKY transcription factor 57 315 389 - -
Pte5g00603 508 MobiDBLite consensus disorder prediction 407 426 - -
Pte5g00603 508 MobiDBLite consensus disorder prediction 470 508 - -
Pte5g00603 508 FunFam WRKY transcription factor 154 226 - -
Pte5g00603 508 SMART WRKY_cls 166 224 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pte5g00603 508 SMART WRKY_cls 329 388 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pte5g00603 508 MobiDBLite consensus disorder prediction 455 469 - -
Pte5g00603 508 Gene3D WRKY domain 314 390 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pte5g00603 508 Gene3D WRKY domain 154 226 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pte5g00603 508 SUPERFAMILY WRKY DNA-binding domain 164 225 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pte5g00603 508 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 91 417 IPR044810 GO:0003700
Pte5g00603 508 MobiDBLite consensus disorder prediction 253 309 - -
Pte5g00603 508 MobiDBLite consensus disorder prediction 442 508 - -
Pte5g00603 508 ProSiteProfiles WRKY domain profile. 161 225 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pte5g00603 508 Pfam WRKY DNA -binding domain 330 386 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pte5g00603 508 Pfam WRKY DNA -binding domain 167 223 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pte5g00603 508 SUPERFAMILY WRKY DNA-binding domain 321 389 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pte5g00603 508 ProSiteProfiles WRKY domain profile. 324 389 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pte5g00603 508 MobiDBLite consensus disorder prediction 276 305 - -
Pte5g00603 508 MobiDBLite consensus disorder prediction 88 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00603 Pte-Chr5 6877220 6882406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00603 328 505 WRKY Transcription Factor Family AT2G04880 34.737 3.15e-15 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pte5g00603 WRKY 7.2e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00603 K18834 - qsa:O6P43_014490 345.51