Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00577 ATGGAAAACATGGATTCAGATGAACCCCAGAAGAAGAGACCCCATTTGACCTCCGTCTCTTCTTTTATGTCTCGCAACTCCAACACTCCTCTTGCCAACAACAATTGCGTCGATGCAGTTGTTCTTCAGAAGCAGAATCAGCAGCTTGTTCAACAGATAAACATGCAAAAAAAGGCATTGCTTGATCTTGAAATGGAGATAAAGGAGTTAGAAGACAAGCAGAATTCTTATGATGACATATTAATTGCAATAAACGGACTATGGAATCAGTTGGTTGATGACCTTGTTCTATTGGGTATAAGAGCTGGGGGTGGTCAATATGCACTAGAAGCTTTGAAGCTCGATGAATCTCCAGGTTTACTTCCTTCATGTCCTGTGGAAGATATTTTCCTCTGTAGGTTGATACAAAAAGACTATAATGAAGCTAATAATAATGAGGGAATTATTGACAATGTTGAGAAAGCCCTTGCCTTTCGACATTCATCTTGTCTAGAGCTGATGAAGTTTGTTGAAGATGCCATTGAAGCTGAGAGGGAGAAAACAGAGGAAATATTTCAGGCCTTTGGAGGACAGTTGTCTTCGGACGATGTCATGATCCTTTTGTCAAAGATTGATGTGTTGATGGAAGAGGAGGCCAAAAATCTGCATGAAATTATAGATGCCCTTCATAAGAAACATAAAGAATATGTTAATTGTATTCAGTCTTATAATGACAGCCATTTGAAGGATGAATGCGAGATTAAATGCCTTGCAGATGAGCTTGATGAAAGGATGACTGAGCTTGAAGAGAGTAGGAGGAGATTAGTCACTTTGAAAATGGAAAAAGACATAGTTCTAGGGATGCATTCCCCCACATCAGATGCTGTAAATGGAAACATGTCACCTGAGAAGCCTTCTGACAAAATAATAGGTTTATGTGATTTGAAGGATTCTATTGAAGAAGCAAAAATACTGGCTACTGATCGCCTAGCAGAGCTTGAAGAGACTCGAGAAGATAATTTGGTATTTTCAAAAGAGTTGCAAGATCTTCAGAATGAACTCAGGGATGACAAATATGTTCACTCATCTAGACTGTATAATCTTGTAAATGATCAGCTCCAGCACTGGAGTGCTGAACTTGAGAGATACAGAATGTTGACAGAATCTCTGCAGGCTGAGAAGCCTCATATATCGAGATGGGAGAAGGAACTAACAACCAAATTAGAGCTAGTAGATTCTGCTATCAACAAGATTGAAACTTCTGACTCCACCATTGAAGAGCTAGAGCTTCAGCTTCAGAAGTGCATTATTGAGAGAAATGATCTTGAAATTAAAATGGAAGAAGCTGTCCAAGATTCTGCAAGGGGGGATATAAAATCCGAGTTTCAAGTAATGGGTTCAGCGTTGTCCAGAGAGATGGGAATGATGGAAGCTCAACTGAAGCGGTGGAAAGATGCAGCCCATGAAGCAGTTTCCTTACGTGAGAAAGTTGACTCAATGAGAACCCTATTGAGCCAGAAGACTGATGAACAAAGGAGCTTATCAGACAAAATTGCGGAGCAAATGGTGGAGATCAAGTCTTTGAAAGCATTGATTGAACGATTGAGGAAGGAAAAATTAGAAACTGAAATTTGTTTGGACATGCATGGACAGGAAACTTATGAGAAGAGAGATTTGATGGACATTAGAGAGTCAGAACGTAGAGCTCTCTCTCAAGCCCAAATTTTGAAAAATGCCCTAGACGAGCATAGTCTGGAGTTGCGAGTTAAAGCTGCCAATGAAGCTGAAGCTGCCTGTCAACAAAGGCTTACAGCGGCTGAAGCTGAAATAGTAGATCTAAGGACCAAGTTGGATGCTTCTGAGAGGGATATTTTGGAGCTGAGAGAAGCCATGAAAGTTAAAGATGCTGAAGCAGAGGCATACATATCTGAAATTGAGACCATTGGTCAAGCATATGAAGATATGCAGACACAGAATCAGCACCTGCTGCAACAGGTTACTGAGAGGGATGATTATAATATTAAGCTTGTGTCTGAGAGTGTGAAGACAAGGCAAGCACGTGGGAATTTACTGTCTGAGAAGCAAGTTTTGGCAAAACAACTACAGCAAATCAATGCATCCACAGAAACTTTGAGGAGTAGGATTGCACACAGTGAAGAGCAGATGAAAGCGATTATGGCAGAAGCTTTTAGGTGTACACAGGAAGAGAAGCACGTTGCAGTCACCCTAGAATCTACCAAGTGGGAATTAGCTGATGCTGAGAAGGAGTTGAAGTGGCTGAAATCTGCTGTCTCTTCTTCTGAGAAGGAATATGATCAAATCCAGCAGGATATTGGTGCTACCGAAATGGAATTGGACACTGAAAGAAATGCAAGGAAGAAGTTGGAAGAAGAACTTGAGGCATTGAATACTAAAATTGAAGAATTGAGTTCTGAAACAGGAGAGACAGCTATACAGAGACTCCAGGATGAAATTCGGACATGCAAGAATATGATCAAGTGCACAGTGTGTTTTGATCGTCCCAAGGAGGTTGTAATCGTCAAGTGTTTTCATTTGTTCTGCAATCAATGCATACAGAGAAACTTGGAACTCCGTCATCGGAAATGCCCTGCTTGTGGAACTGCATTTGGTCAGAATGATGTTCGTTTTGTGAAAATATGA 2640 0.4068 MENMDSDEPQKKRPHLTSVSSFMSRNSNTPLANNNCVDAVVLQKQNQQLVQQINMQKKALLDLEMEIKELEDKQNSYDDILIAINGLWNQLVDDLVLLGIRAGGGQYALEALKLDESPGLLPSCPVEDIFLCRLIQKDYNEANNNEGIIDNVEKALAFRHSSCLELMKFVEDAIEAEREKTEEIFQAFGGQLSSDDVMILLSKIDVLMEEEAKNLHEIIDALHKKHKEYVNCIQSYNDSHLKDECEIKCLADELDERMTELEESRRRLVTLKMEKDIVLGMHSPTSDAVNGNMSPEKPSDKIIGLCDLKDSIEEAKILATDRLAELEETREDNLVFSKELQDLQNELRDDKYVHSSRLYNLVNDQLQHWSAELERYRMLTESLQAEKPHISRWEKELTTKLELVDSAINKIETSDSTIEELELQLQKCIIERNDLEIKMEEAVQDSARGDIKSEFQVMGSALSREMGMMEAQLKRWKDAAHEAVSLREKVDSMRTLLSQKTDEQRSLSDKIAEQMVEIKSLKALIERLRKEKLETEICLDMHGQETYEKRDLMDIRESERRALSQAQILKNALDEHSLELRVKAANEAEAACQQRLTAAEAEIVDLRTKLDASERDILELREAMKVKDAEAEAYISEIETIGQAYEDMQTQNQHLLQQVTERDDYNIKLVSESVKTRQARGNLLSEKQVLAKQLQQINASTETLRSRIAHSEEQMKAIMAEAFRCTQEEKHVAVTLESTKWELADAEKELKWLKSAVSSSEKEYDQIQQDIGATEMELDTERNARKKLEEELEALNTKIEELSSETGETAIQRLQDEIRTCKNMIKCTVCFDRPKEVVIVKCFHLFCNQCIQRNLELRHRKCPACGTAFGQNDVRFVKI* 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00577 879 Coils Coil 736 763 - -
Pte5g00577 879 SMART ring_2 827 865 IPR001841 -
Pte5g00577 879 Coils Coil 511 531 - -
Pte5g00577 879 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 808 878 IPR013083 -
Pte5g00577 879 PANTHER RING FINGER PROTEIN-RELATED 5 879 IPR013956 GO:0004842|GO:0010390
Pte5g00577 879 Coils Coil 404 445 - -
Pte5g00577 879 Coils Coil 582 630 - -
Pte5g00577 879 Coils Coil 771 805 - -
Pte5g00577 879 Coils Coil 366 386 - -
Pte5g00577 879 MobiDBLite consensus disorder prediction 1 24 - -
Pte5g00577 879 Coils Coil 247 274 - -
Pte5g00577 879 Pfam Zinc finger, C3HC4 type (RING finger) 826 867 - -
Pte5g00577 879 SUPERFAMILY RING/U-box 826 871 - -
Pte5g00577 879 Coils Coil 46 80 - -
Pte5g00577 879 Coils Coil 309 346 - -
Pte5g00577 879 ProSitePatterns Zinc finger RING-type signature. 842 851 IPR017907 -
Pte5g00577 879 ProSiteProfiles Zinc finger RING-type profile. 827 865 IPR001841 -
Pte5g00577 879 CDD RING-HC_Bre1-like 819 875 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00577 Pte-Chr5 6395355 6405738 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00577 800 874 RAD5 or RAD16-like Gene Family AT5G05130 26.190 4.22e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00577 K10696 - qsa:O6P43_020782 1251.88