Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00576 ATGCCACGTAACAGAGCAACGGCTGGAGAACCATCACCAGAAACCAAACAGATCGGTCAAGAATCGAAGAACCCAGATAAGGAAATCAGATTCCGTGGTGTACGGAAGCGTCCATGGGGCCGATTCGCCGCAGAGATCAGAGATCCTTGGAGGAAAGCTCGTGTTTGGCTTGGTACTTTTGATTCTGCAGAAGAAGCTGCACGAGCTTACGATGCAGCCGCTCGTTCTTTTCGTGGACCTAAAGCCAAGACCAATTTCCCTTTGACTGATCCGGAATCAAATCTGACTACTGCGATTCATTTGCATCAACAGGCTTCCGATGATGAGTTCGGTAAGTTTGATCCGGCTCAGGTGGCCCGACCGACGTCAAGCGGCATGAGTAGCACTGTCGAGTCTTTCAGTGGTCCTAGGGTTTTGAATCCGCTTCCTAAAGTACAAAGGGGACCAGTGAACCCGATTCCTACCGATGATTTCCATAGCGATTGTGATTCGTCGTCTTCAGTGATCGATGATGGCGATGATTGTGTTCTTACTTCTTCGTTTCGTAAAGTTCTTCCCTTTGATCTCAATCGACCACCCCCAATGGACAATCTGAATTACGCAGTTGAAGAGCTTCAAGCCACTGCTTTATGCCTCTAA 639 0.4851 MPRNRATAGEPSPETKQIGQESKNPDKEIRFRGVRKRPWGRFAAEIRDPWRKARVWLGTFDSAEEAARAYDAAARSFRGPKAKTNFPLTDPESNLTTAIHLHQQASDDEFGKFDPAQVARPTSSGMSSTVESFSGPRVLNPLPKVQRGPVNPIPTDDFHSDCDSSSSVIDDGDDCVLTSSFRKVLPFDLNRPPPMDNLNYAVEELQATALCL* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00576 212 Pfam AP2 domain 30 79 IPR001471 GO:0003700|GO:0006355
Pte5g00576 212 MobiDBLite consensus disorder prediction 120 135 - -
Pte5g00576 212 FunFam Ethylene-responsive transcription factor 2 30 88 - -
Pte5g00576 212 SUPERFAMILY DNA-binding domain 31 88 IPR016177 GO:0003677
Pte5g00576 212 MobiDBLite consensus disorder prediction 1 32 - -
Pte5g00576 212 Gene3D AP2/ERF domain 29 89 IPR036955 GO:0003700|GO:0006355
Pte5g00576 212 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 20 171 - -
Pte5g00576 212 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
Pte5g00576 212 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
Pte5g00576 212 CDD AP2 30 87 IPR001471 GO:0003700|GO:0006355
Pte5g00576 212 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Pte5g00576 212 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700|GO:0006355
Pte5g00576 212 MobiDBLite consensus disorder prediction 113 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00576 Pte-Chr5 6391827 6392465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00576 27 137 AP2-EREBP Transcription Factor Family AT1G50640 64.000 8.01e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pte5g00576 AP2 4.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00576 K09286 - qsa:O6P43_014526 268.085