Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00573 ATGATGTCGGCGCTGTTGTATCATCTACCCCCTACCCAGATCGACCTGGGTGTAAAGTACGGTGTTGAGCTCCCTGAAAGAGTTGGGCAACCAGATTGTGGGTACTTTCTGAAAACAGGAACATGCAAGTATGGATCTACATGTAAGTACCATCACCCAAGGGACAGAAGAGGTGCTGCTCCAGTATCCATCAATTCTGTCGGTCTTCCCATGCGTCCAGATGAAAAACCGTGTCCCTATTACATGCGGACAGGGTCATGTAAGTTTGGAATTGGTTGCAAGTTTCATCATCCACAGCCTGCTGGAAGTGTCTTACCTTTAGCTTCCACAGTTATTCCTTCAACTCTACCTTATGTTGGTGGATATCCTGCATGGTCAATGCCTCAAGTGTCATATGTCAGTAGTCCACAGGGATTGCCAGTTTATGTTTCTCCTTCTCAAGGAGTTCTACCTGTGCAGAGCTGGAACGCCTACATGGGAAATCCTGCATCATCTACCGGTATGCTTGGGTCCAATCTTGTTTTCAACTCTGCCAACTTGAGTGACCCCGGTTCAACCAATTTCCCTGAGAGGCCTGATCAACCAGAATGCCGTCATTTTATCAGTACAGGGACCTGCAAGTATGGATCTGATTGCAAGTTCAACCATCCAAAAGACAGAGTTGCTCAATCCCTTCCCATTTCACTTGGCTCTCCGACCAGACCTGGGCAAGCTATCTGTTCATATTTTAGAATCTATGGATATTGCAAATATGGTTCAACGTGCAAATTTGATCACCCGATGATGGCACATGCTTATAACTATAACTCGACCCAGTTTTCTCTCCCAGTGCATGAAACATCTCTTTCAGGTTATCCAATGGATATGCCAACAACCGAGTCATCTGAAAGTTCTCCTGTGAAGTTATCAAAATCACCTGAGTTGGCTCAGGAAGCTCATCTTGTTAGAGACAAGCTCCAAAGTTCTGATGCCAAGGCCATTGAGAATTCATCCAATCATCCAGATTCTCCCAGCAGGACTTCCTTGATAGACTGCTCAGAGTCTTCACATGATTCTTCAAACTGA 1065 0.4545 MMSALLYHLPPTQIDLGVKYGVELPERVGQPDCGYFLKTGTCKYGSTCKYHHPRDRRGAAPVSINSVGLPMRPDEKPCPYYMRTGSCKFGIGCKFHHPQPAGSVLPLASTVIPSTLPYVGGYPAWSMPQVSYVSSPQGLPVYVSPSQGVLPVQSWNAYMGNPASSTGMLGSNLVFNSANLSDPGSTNFPERPDQPECRHFISTGTCKYGSDCKFNHPKDRVAQSLPISLGSPTRPGQAICSYFRIYGYCKYGSTCKFDHPMMAHAYNYNSTQFSLPVHETSLSGYPMDMPTTESSESSPVKLSKSPELAQEAHLVRDKLQSSDAKAIENSSNHPDSPSRTSLIDCSESSHDSSN* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00573 354 ProSiteProfiles Zinc finger C3H1-type profile. 72 100 IPR000571 GO:0046872
Pte5g00573 354 MobiDBLite consensus disorder prediction 284 304 - -
Pte5g00573 354 SUPERFAMILY CCCH zinc finger 31 56 IPR036855 GO:0046872
Pte5g00573 354 ProSiteProfiles Zinc finger C3H1-type profile. 27 55 IPR000571 GO:0046872
Pte5g00573 354 ProSiteProfiles Zinc finger C3H1-type profile. 234 262 IPR000571 GO:0046872
Pte5g00573 354 MobiDBLite consensus disorder prediction 284 354 - -
Pte5g00573 354 PANTHER PROTEIN PHOSPHATASE RELATED 21 291 - -
Pte5g00573 354 ProSiteProfiles Zinc finger C3H1-type profile. 191 219 IPR000571 GO:0046872
Pte5g00573 354 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 74 99 IPR000571 GO:0046872
Pte5g00573 354 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 236 261 IPR000571 GO:0046872
Pte5g00573 354 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 193 218 IPR000571 GO:0046872
Pte5g00573 354 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 30 54 IPR000571 GO:0046872
Pte5g00573 354 SUPERFAMILY CCCH zinc finger 233 260 IPR036855 GO:0046872
Pte5g00573 354 MobiDBLite consensus disorder prediction 324 354 - -
Pte5g00573 354 SUPERFAMILY CCCH zinc finger 71 100 IPR036855 GO:0046872
Pte5g00573 354 SMART c3hfinal6 191 218 IPR000571 GO:0046872
Pte5g00573 354 SMART c3hfinal6 27 54 IPR000571 GO:0046872
Pte5g00573 354 SMART c3hfinal6 74 99 IPR000571 GO:0046872
Pte5g00573 354 SMART c3hfinal6 234 261 IPR000571 GO:0046872
Pte5g00573 354 SUPERFAMILY CCCH zinc finger 194 220 IPR036855 GO:0046872
Pte5g00573 354 Gene3D - 26 106 - -
Pte5g00573 354 Gene3D - 188 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00573 Pte-Chr5 6367909 6372159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00573 7 344 C2H2 Transcription Factor Family AT2G32930 41.351 2.68e-81 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pte5g00573 zf-CCCH 2.2e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00573 - - cave:132182298 412.535