Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00565 ATGAATTCTGTGGTTTCTCTCGCTCGTAGGATTTTCTTACAGTCTAAGTCAAACAGTTATACCCCTCCTCCTTTTACATGGAGATTCTACTCTTCCTCACCATCTAGCTCAGAGTTTGCAGCAAGCAACAAGCTCTTCGTTGGAGGTTTGTCCTGGTCTTTGGATGAGAAATCTCTCAAGGATGCCTTCTCTTCGTTTGGAGAAGTCACGGAAGTGAGGATTGTGTATGATAAAGACAGTGGTAGGTCCAGAGGGTTTGGGTTTGTAATCTTTGCAAATTCAGGCAATGCCCAATCTGCAAAAGATGCAATGGACGGAAAGGCACTGTTGGGTCGACCGCTGAGGATAAGCTATGCTCATGAAAAAGTCCGTGGTGGACCTGTTGTAGTTCCTCGTCTTTCAAGCGGAGATTTCAATGGTCGTACTTAA 429 0.4499 MNSVVSLARRIFLQSKSNSYTPPPFTWRFYSSSPSSSEFAASNKLFVGGLSWSLDEKSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVIFANSGNAQSAKDAMDGKALLGRPLRISYAHEKVRGGPVVVPRLSSGDFNGRT* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00565 142 SMART rrm1_1 44 117 IPR000504 GO:0003723
Pte5g00565 142 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 43 121 IPR000504 GO:0003723
Pte5g00565 142 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 35 123 - -
Pte5g00565 142 CDD RRM2_NsCP33_like 44 119 - -
Pte5g00565 142 Gene3D - 14 125 IPR012677 -
Pte5g00565 142 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 45 115 IPR000504 GO:0003723
Pte5g00565 142 SUPERFAMILY RNA-binding domain, RBD 21 128 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00565 Pte-Chr5 6256442 6258216 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00565 41 100 C2H2 Transcription Factor Family AT2G19380 43.333 4.35e-13 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00565 - - qsa:O6P43_014563 176.022