Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00563 ATGGCCAAGACTAAGCCTGGGAAAAAGGACCTTGACACTTACAATATCAAAGGGACGAACAAAATTGTTCGACCTGGTGATTGTGTAATGATGCGACCAGCTGACTCTGATAAACCTCCTTATGTGGCTCGTGTGGAGAAGATTGAAGCTGATCATCGCAATAATGTGAAGGTTCGTGTTCGTTGGTATTACAGGCCTGAGGAGTCTTTGGGTGGTCGGAGACAGTTTCATGGGGCAAAGGAGTTGTTTTTATCTGACCATTTTGATGTGCAGAGTGCACATACCATTGAGGGGAAGTGTACAGTGCATTCCTTCAAGAACTACACTAAGTTGGAGAATGTAGGAGCTGAGGATTACTTTTGTAGGTTTGAATACAAGGCTGCAACTGGAGGATTCACACCCGACCGTGTGGCCGTGTATTGCAAGTGCGAGATGCCTTACAATCCTGATGATCTTATGGTCCAGTGCGAGGGATGCAAAGACTGGTTTCATCCTTCTTGTATGGGCATGACCATTGAAGATGCAAAAAAGTTGGATCATTTCTTGTGTTCAGACTGTTCATCTGATGATGATGCCAAAAGATCCATGAATTCATTTCCTGTTTCCCCATCTGTTGACTCTAAGGTTGAACCCAAACGCAGAAAGAGATAA 651 0.4424 MAKTKPGKKDLDTYNIKGTNKIVRPGDCVMMRPADSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESLGGRRQFHGAKELFLSDHFDVQSAHTIEGKCTVHSFKNYTKLENVGAEDYFCRFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEDAKKLDHFLCSDCSSDDDAKRSMNSFPVSPSVDSKVEPKRRKR* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00563 216 SUPERFAMILY FYVE/PHD zinc finger 130 189 IPR011011 -
Pte5g00563 216 SMART PHD_3 140 187 IPR001965 -
Pte5g00563 216 ProSiteProfiles Zinc finger PHD-type profile. 138 189 IPR019787 -
Pte5g00563 216 PANTHER OS08G0421900 PROTEIN 1 208 - -
Pte5g00563 216 FunFam Chromatin remodeling protein EBS 1 132 - -
Pte5g00563 216 Gene3D - 2 133 IPR043151 -
Pte5g00563 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 201 IPR013083 -
Pte5g00563 216 ProSitePatterns Zinc finger PHD-type signature. 141 186 IPR019786 -
Pte5g00563 216 FunFam Bromo-adjacent homology (BAH) domain-containing protein 133 204 - -
Pte5g00563 216 ProSiteProfiles BAH domain profile. 21 136 IPR001025 GO:0003682
Pte5g00563 216 CDD BAH_BAHCC1 22 156 - -
Pte5g00563 216 SMART BAH_4 21 136 IPR001025 GO:0003682
Pte5g00563 216 MobiDBLite consensus disorder prediction 189 216 - -
Pte5g00563 216 Pfam BAH domain 23 135 IPR001025 GO:0003682
Pte5g00563 216 Pfam PHD-finger 140 188 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00563 Pte-Chr5 6232383 6237456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00563 41 138 Core DNA Replication Machinery Family AT4G14700 32.323 1.03e-09 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pte5g00563 BAH 5.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00563 K25868 - zju:107417125 450.284