Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00560 ATGAAACCCAGAATTGGGTTCGGTTTATTGTTGTTCTTGGGATGGAGTATTTGTTTGAATACTGTACAATCGAAGTGCAGTTCAGGTTGTGATTTAGCTTTAGCATCCTACTATGTCTGGTATGGGAGCAATCTTACATATGTGTCTCAGGTTATGCAAACGGATGCTGACACTATTGTAAGTTACAACAAGGATAAAGTACCCAACAAAGACAGTGTTCAGGCTTTCATGAGAATCAATGTTCCATTTAGATGTGATTGTATTGGTGGTGAATTTCTGGGGCACGTGTTTAACTACACAGTTCATTCAGGGGACACTTATAGTACTGTCTCATCAACAGCATATTCCAATTTGACCTCAGCTCAGATGTTGCAGAATACCAATCGTTATCCAGCAACAAATATTCCTGACACAAATGCGTGGCTTAACGTCACGATTAATTGTTCTTGTGGGAATAGCTCAATTTCCACCGCTTATGGCCTGTTTGTTACATACCCACTTATGAGTAATGATAGCTTGGACTCCATTGCTGATGCCACAAAACTTGACCGGAATTTGCTGCAAAGATATAATCCTGGTGTCAATTTCAGCCAAGGCCATGGTCTGGTTTACATTCCAGGAAAAGATCAAAATGGTGTTTATTTACCCTTGAAGTCAAGTGCAGGAGGTACAGGTCTAAGTTCTGGTGCTATCGGAGGTATATCTGTTGGAGCAGTAGCAGGGCTTCTTTTGTTGGCAGCTTCTGTTTATTTTGGGTTTTACAGAAAGAGGAAATTGAAGGAAGCAACTTTGCTCGCCCAAGATTCTAAAGATCCATCTGCTCATGCCGACCATGTTCGTGGTAGTACTGAACATGAATCTTCCGAATCTGCTGCTCGTGATGGTGATGGTGCTTCTAGCCTCACAGGGATTACTGTTAACAAATCAGTAGAGTTCTCTTATGATGAACTAGCCAAGGCTACAGATAACTTCAGTATGGCTAACAAGATTGGCCAAGGTGGCTTTGGGGCTGTTTTCTATGCAGAGCTGAGGGGCGAGAAAGCCGCAATCAAGAAGATGGATATGCAAGCATCCAGAGAATTCTTGGCAGAGTTGAAGGTCTTGACGCGTGTGCATCACCTGAACCTGGTGCGCTTGATTGGATATTGTGTCAAGGATTCTCTTCTTGTCTATGAATACATTGCAAATGGAAACTTAAGTCAGTATTTGCACGGGTCAGGAAGAGACCCACTTTCATGGTCTACAAGGGTGCAAATTGCTTTGGATTCAGCAAGAGGTCTTGAATATATTCATGAGCATACAGTACCTGTCTATATTCATCGTGATATCAAATCAGCAAATATATTGATCGACAAAAACTTCCATGGGAAGGTTGCAGATTTTGGATTGACTAAACTGACTGAAGTTGGGAACTCATCAATTCCAACTCGTCTTGTGGGAACATTTGGATACATGCCCCCAGAATATGCTCAATATGGAGATGTCTCACCTAAAGTAGATGTATATGCTTTTGGAGTTGTTCTCTATGAACTTATTTCTGGAAAGGGAGCAATAGTCAAGACAAATGAATCTCTTACTGAAACAAGGGGCCTAGTAGCTTTGTTTGAAGAAGTCCTGAAGAACCCTGATCCTCAAGAACTTTGCAAACTGGTTGACCCTAGGTTGGAAGATAACTATTCAATTGATTCTGTTCTCAAGATGGCTCAACTTGCCAAAGCTTGCACGCATGAAGATCCACGATTACGTCCAAGTATGAGATCTATTGTTGTAGCTCTGATGACCCTTTCATCTAATACTGAGGAATGGGATGTTGGCTCCTATTATGAAAATCAAAATATGATCAATCTTATGTCTGGGAGATAG 1863 0.4138 MKPRIGFGLLLFLGWSICLNTVQSKCSSGCDLALASYYVWYGSNLTYVSQVMQTDADTIVSYNKDKVPNKDSVQAFMRINVPFRCDCIGGEFLGHVFNYTVHSGDTYSTVSSTAYSNLTSAQMLQNTNRYPATNIPDTNAWLNVTINCSCGNSSISTAYGLFVTYPLMSNDSLDSIADATKLDRNLLQRYNPGVNFSQGHGLVYIPGKDQNGVYLPLKSSAGGTGLSSGAIGGISVGAVAGLLLLAASVYFGFYRKRKLKEATLLAQDSKDPSAHADHVRGSTEHESSESAARDGDGASSLTGITVNKSVEFSYDELAKATDNFSMANKIGQGGFGAVFYAELRGEKAAIKKMDMQASREFLAELKVLTRVHHLNLVRLIGYCVKDSLLVYEYIANGNLSQYLHGSGRDPLSWSTRVQIALDSARGLEYIHEHTVPVYIHRDIKSANILIDKNFHGKVADFGLTKLTEVGNSSIPTRLVGTFGYMPPEYAQYGDVSPKVDVYAFGVVLYELISGKGAIVKTNESLTETRGLVALFEEVLKNPDPQELCKLVDPRLEDNYSIDSVLKMAQLAKACTHEDPRLRPSMRSIVVALMTLSSNTEEWDVGSYYENQNMINLMSGR* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00560 620 SUPERFAMILY Protein kinase-like (PK-like) 304 592 IPR011009 -
Pte5g00560 620 FunFam PTI1-like tyrosine-protein kinase 3 394 606 - -
Pte5g00560 620 ProSitePatterns Protein kinases ATP-binding region signature. 330 352 IPR017441 GO:0005524
Pte5g00560 620 CDD STKc_IRAK 330 589 - -
Pte5g00560 620 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 13 606 IPR044812 GO:0019199|GO:0045087
Pte5g00560 620 ProSiteProfiles Protein kinase domain profile. 324 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte5g00560 620 MobiDBLite consensus disorder prediction 266 299 - -
Pte5g00560 620 MobiDBLite consensus disorder prediction 266 292 - -
Pte5g00560 620 Gene3D Transferase(Phosphotransferase) domain 1 394 614 - -
Pte5g00560 620 ProSitePatterns Serine/Threonine protein kinases active-site signature. 438 450 IPR008271 GO:0004672|GO:0006468
Pte5g00560 620 SMART serkin_6 324 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte5g00560 620 FunFam LysM receptor kinase 2 303 393 - -
Pte5g00560 620 Gene3D Phosphorylase Kinase; domain 1 298 393 - -
Pte5g00560 620 Pfam Protein tyrosine and serine/threonine kinase 326 591 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00560 Pte-Chr5 6195097 6201024 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00560 1 621 Receptor kinase-like Gene Family AT3G21630 57.820 0.0 689
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Pte5g00560 PK_Tyr_Ser-Thr 1.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00560 K13429 - qsa:O6P43_014568 861.292