Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00534 ATGGAGTCGCAAGAAGGAAATGGTGGTAGCGGTAAAGGGGGATCAATGCCGCCGCCACCAGCAATGAAGGCAGAATCAGAAAGCAAAGCTATAGAGCCCGTCAAGAACAAAACTTCACTGGTTCCCATGGCCAGAAGGGGTCCTGGGACCAAAGGCCAAAAGATATCTCTTCTAACAAATCATTTTAGAGTCAATTGCAATAACACTGACGGTCAATTCTTTCAGTACAGTGTAGCTCTGTATTATGAAGATGGGCGGCCTGTAGAAACCTCAGGTGTTGGGAGACTGGTGATCGACAAGGTTCAAGGGACATATGGCAACCAGCTGGGAGGAAGGGAGTTTGCCTATGATGGAGAGAAGAGTTTGTTTACTATCGGTCCTCTTCCAGAAAACAAACTTCAATTCACTGTTGTCATAGAGGATATCAAGTCAAGCAGGGGTGGTAATGGGAACGGTAATCATGATCAAGGTCCAGATGAGAGTGACAGGAAGAGAAGAAGAAGGCTCAATGCTAAAACTTACAGAATAGAAATAAACTTTGCTGCTAGGATTCCATTGCAGGAAATTGGGAATGCCCTCCGTGGTCAGGAGTCAGAGAATTCTCAGGACGCATTGAGAGTGTTCGATATCATATTAAGGCAACATGCTGCTAGACAGGGATGTCTCCTTGTTCGGCAATCTTATTTCCACAATGATCCAAATAATTGCACTGACATTGGTGGCGGAATCCTTGGATGCCGAGGGTTCCACTCAAGTTTTAGAACTGCACAGACTGGTCTAACTCTTAACATTGATGTATCAACTACAATCATTCTTACACCTGGACCTATAGTGAACTTCTTGATCAAAAACCAGAATGTGAGGGATCCATACTCACTTGACTGGGCCAAGGCGAAACGTCAACTTAAGAATCTGAAAATCAAGACAAGACCAAATAATTTTGCCTTCAAGATAACTGGTTTAAGTGAGAGAACATGCAAAGAGCAAACCTTTTTACTAAAGCAAGAAGGAGTGAACGACGATGGCGTAGAGGTGACTGTATACGATTATTTTGTTAAATACAGAAATATAGACCTTGAATATTCTGGAGATTTTCCGTGCATTAATGTTGGGAAGCCAAAGCGGCCAACCTACTATCCCCTTGAGCTTTGTGATTTGATGCCACTACAACGATATACAAAAACACTGACAACTTTCCAAAGATCTGCATTGGTGGAAAAGTCTAGGCAAAAGCCGCAAGAGAGGATGGCAGTGCTGGCTGATGCTCTGAGACTCAATAACTATGGTGCTGATCCTATGCTTCGCCAGTGTGGCATAGGAATAAATGGTAGCTTTACTCAACTGGAGGGTCGTGTTCTTGCTGCCCCTAGGTTGAAAGTTGGTAATGGGGAGGACTTGAACCCAAGAAATGGAAGGTGGAACTTGAACTACAAGGTATCAGTGTTTCCAAGAGAAATATCTTGGTACTTCAGAATGTTTTCAAACTTATCAAATGCATGCCCTTTGCAGAAACTGGCACAACCAACAAAGATAACGCGCTGGGCTGTTGTGAATTTCTCTGCACGCTGCAATATACAGAATCTTATACAGAGTCTAATTAAAGTTGGAGATATGAAAGGGGTTCAAATTAGTCCACCATTTGATGTGTTTGAAGAAAATCCCCAGTTCAGGCGTGCCCCACCAGTGGTTAGAGTGGAGAAGATGTTTGAAGACATGCAATCAAAGCTTCCAGGGGCTCCTGAATTTCTTCTGTGCTTGCTTCCTGAGAGAAAAAACTGTGATATCTATGGTCCATGGAAAAGGAAGAGCCTTGCTGAGTTTGGAGTTGCTAATCAGTGCATGGCCCCTGCTAAAATAAACGACCAATACCTGACTAATGTTCTTTTGAAGATCAATGCCAAGCTTGGTGGGTTGAATTCTCTTTTGGCAGTTGAGCACCAGCCTTCTATTCCTGTGGTGTCCAAAGTTCCAACCCTTATTCTTGGCATGGACGTCTCCCATGGTTCTCCAGGCCAAAGTGATATTCCATCTATAGCTGCAGTTGTCAGTTCAAGGCAATGGCCTTTGATATCAAAGTATAGGGCATGCGTGCGTACACAATCAGCGAAGCTTGAGATGATCGATTCTTTGTTCAAACCTGTTTCTGAAAGCGAAGATGAAGGAATAATGAGGGAAATATTGATCGACTTTTATACAAGTTCTGGGAAAAGGAAACCTGACAATATCATTATATTCAGGGATGGAGTCAGCGAGTCACAGTTCAGCCAAGTTTTGAATGTTGAACTCCAACAAATCGTTGAGGCTTGCAAGTTCCTGGATTATAATTGGAATCCCAAGTTTGTTGTAATTGTTGCTCAAAAAAGACACCATACCAGATTTTTCCAGAGTGGTGGAGGAACTGACAATGTCCCCCCAGGAACTATCATCGACACCAAAATCTGTCACCCCAGGAACTATGACTTTTATCTTTGTGCTCATGCTGGAATGATAGGAACCACAAGACCTACTCATTACCATGTTCTGTTAGATCAGGTTGGTTTTTCACCTGATGATATTCAGGAACTTGTGCATTCCCTGTCATATGTGTATCAGAGAAGCACCACGGCCATTTCAGTTGTTGCTCCAGTATCCTATGCTCACTTGGCTGCATCCCAGATGATTCAGTTTATGAAGTTTGAGGACAAGTCAGAGACATCATCCAGTCAAGGTGGTGGGAGTGCAACTGGTGCTGCTATCCCACAACTGCCAAAATTGGAAGAGAAAGTCTGCAATTCTATGTTCTTTTGCTGA 2790 0.4323 MESQEGNGGSGKGGSMPPPPAMKAESESKAIEPVKNKTSLVPMARRGPGTKGQKISLLTNHFRVNCNNTDGQFFQYSVALYYEDGRPVETSGVGRLVIDKVQGTYGNQLGGREFAYDGEKSLFTIGPLPENKLQFTVVIEDIKSSRGGNGNGNHDQGPDESDRKRRRRLNAKTYRIEINFAARIPLQEIGNALRGQESENSQDALRVFDIILRQHAARQGCLLVRQSYFHNDPNNCTDIGGGILGCRGFHSSFRTAQTGLTLNIDVSTTIILTPGPIVNFLIKNQNVRDPYSLDWAKAKRQLKNLKIKTRPNNFAFKITGLSERTCKEQTFLLKQEGVNDDGVEVTVYDYFVKYRNIDLEYSGDFPCINVGKPKRPTYYPLELCDLMPLQRYTKTLTTFQRSALVEKSRQKPQERMAVLADALRLNNYGADPMLRQCGIGINGSFTQLEGRVLAAPRLKVGNGEDLNPRNGRWNLNYKVSVFPREISWYFRMFSNLSNACPLQKLAQPTKITRWAVVNFSARCNIQNLIQSLIKVGDMKGVQISPPFDVFEENPQFRRAPPVVRVEKMFEDMQSKLPGAPEFLLCLLPERKNCDIYGPWKRKSLAEFGVANQCMAPAKINDQYLTNVLLKINAKLGGLNSLLAVEHQPSIPVVSKVPTLILGMDVSHGSPGQSDIPSIAAVVSSRQWPLISKYRACVRTQSAKLEMIDSLFKPVSESEDEGIMREILIDFYTSSGKRKPDNIIIFRDGVSESQFSQVLNVELQQIVEACKFLDYNWNPKFVVIVAQKRHHTRFFQSGGGTDNVPPGTIIDTKICHPRNYDFYLCAHAGMIGTTRPTHYHVLLDQVGFSPDDIQELVHSLSYVYQRSTTAISVVAPVSYAHLAASQMIQFMKFEDKSETSSSQGGGSATGAAIPQLPKLEEKVCNSMFFC* 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00534 929 MobiDBLite consensus disorder prediction 1 52 - -
Pte5g00534 929 FunFam Protein argonaute 3 650 929 - -
Pte5g00534 929 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 41 893 - -
Pte5g00534 929 SMART Piwi_a_2 582 891 IPR003165 GO:0003676
Pte5g00534 929 SUPERFAMILY Ribonuclease H-like 568 889 IPR012337 -
Pte5g00534 929 Pfam Argonaute linker 1 domain 224 271 IPR014811 -
Pte5g00534 929 CDD Piwi_ago-like 432 883 IPR045246 -
Pte5g00534 929 SMART DUF1785_2 222 274 IPR014811 -
Pte5g00534 929 Pfam PAZ domain 279 404 IPR003100 GO:0005515
Pte5g00534 929 ProSiteProfiles Piwi domain profile. 582 891 IPR003165 GO:0003676
Pte5g00534 929 Gene3D - 452 643 - -
Pte5g00534 929 MobiDBLite consensus disorder prediction 144 165 - -
Pte5g00534 929 SUPERFAMILY PAZ domain 269 428 IPR036085 GO:0005515
Pte5g00534 929 Gene3D paz domain 268 392 - -
Pte5g00534 929 Pfam N-terminal domain of argonaute 53 212 IPR032474 -
Pte5g00534 929 Pfam Argonaute linker 2 domain 414 459 IPR032472 -
Pte5g00534 929 Gene3D - 650 929 IPR036397 GO:0003676
Pte5g00534 929 FunFam Protein argonaute 7 269 392 - -
Pte5g00534 929 Pfam Piwi domain 583 891 IPR003165 GO:0003676
Pte5g00534 929 ProSiteProfiles PAZ domain profile. 299 388 IPR003100 GO:0005515
Pte5g00534 929 CDD PAZ_argonaute_like 274 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00534 Pte-Chr5 5667159 5673337 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00534 28 930 Eukaryotic Initiation Factors Gene Family AT1G48410 34.274 1.04e-156 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00534 K11593 - csin:114306674 1354.73