Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00532 ATGGCTAAGAAACGAAAGCTTCGATCTTCCGAATCAGAACCCAGCAAGACAACCGAACCACAATCCCAATCCCAAACCCAGGAAGATAACTTGACAGGAGAACCGCAAGAACAACAGACACAACCCGAGTCTGAACCCTTCGAGAAACAAACTCATCAGACGGAACCAGAGACCATGGTCGTCGATGAAGCTCGAGGGATAGAAGAAGACCCACAAGAAGATGAACAAGAAGAAGAGAAAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGATGGAGAAGGGGCTCTAGGGAATGAGCCTGTTCAGTCGGAATCTAATGCTAAAACAGAAGTTAATGGAAATGGAGAGGGCCATGATGACGGGGAAGAAACGGAAGAGTTGGAAGAAGAGCCTGTGGAGAAGATGCTCGAGCCGCTTACGAAGGAGCAGTTGCTCTCTCTTGTTAAGAAAGCTTTGGAGAAGCACCCTGATTTTGCAGCCAACGTACGTGAGCTTGCAGAACAAGACCCTGCTCATAGAAAGATTTTCATTCATGGTCTTGGTTGGGACACCACTGCTGAAACCCTAACTAGTGTGTTTGGTAAATACGGTGAGATCGAGGATTGCAAGCATGTTACTGATAGGGTGTCTGGGAAATCGAAAGGTTACGCCTTTATACTATATAAGCATCGTGATGGCGCGCGTAGGGCATTGAAGGAACCTCAGAAACTGGTTGGGAATAGGACAGCTTCATGTCAACTGGCCTCAGTTGGACCTGCTTCCACACCACAGCCTGCGGCGACTCCACCACTTTCTGAGTATACCCAGAGGAAGATTTTTGTGAGTAATGTTGGTGCTGAGGTAGATCCCCAGAAACTGCTCAAGTTTTTCAGACAGTTTGGTGAGATTGAAGAAGGTCCATTGGGTCTTGATAAGCATACAGGGAAGCCTAAAGGGTTTGCATTGTTCGTGTACAAGTCGATTGAGAGTGCTAAGAAGGCTTTGGAAGAGCCACATAAGAATTTTGAGGGTCATATGTTGCATTGCCAGAAGGCTATCGATGGGCCTAAGCCAAATAAAGGATTTCATCAACAGCAGCATCACGATTATTCTTCTCATCAGCAGCAGTCACATTCACATTACCATTCTAGAAAGGACAAGGATAAGTATTCATCAGTTGCTGCTGGACCCGGCCATTTAATGGCACCATCAGGTCCTCCAGTGGGTTATAGTCCTGGGGTGGCAGCTCAGGGGTTCAACCCAGCACTTAATCAGGCTTTGACTGCTTTGCTTGCAACTCAGGGAGCTGGAATAGGGCTTGGAAATCTGCTTGGAGGTATTGGTGGAGTGCCTATGAGCCAGTCTGCACCACCATCTGCTTATAGCAGTCAGACTCCTGGGGCGTATGGAAACCAGCCAGCAATGCAACTAGGCTACCAGAATCCACAACTTGGGCAGAGCAGTTCTGTGAGACCTCACCCTGGTGGCGGTGCACCGTACATGGGTCATTAG 1491 0.4829 MAKKRKLRSSESEPSKTTEPQSQSQTQEDNLTGEPQEQQTQPESEPFEKQTHQTEPETMVVDEARGIEEDPQEDEQEEEKEEEEEEEEEEDGEGALGNEPVQSESNAKTEVNGNGEGHDDGEETEELEEEPVEKMLEPLTKEQLLSLVKKALEKHPDFAANVRELAEQDPAHRKIFIHGLGWDTTAETLTSVFGKYGEIEDCKHVTDRVSGKSKGYAFILYKHRDGARRALKEPQKLVGNRTASCQLASVGPASTPQPAATPPLSEYTQRKIFVSNVGAEVDPQKLLKFFRQFGEIEEGPLGLDKHTGKPKGFALFVYKSIESAKKALEEPHKNFEGHMLHCQKAIDGPKPNKGFHQQQHHDYSSHQQQSHSHYHSRKDKDKYSSVAAGPGHLMAPSGPPVGYSPGVAAQGFNPALNQALTALLATQGAGIGLGNLLGGIGGVPMSQSAPPSAYSSQTPGAYGNQPAMQLGYQNPQLGQSSSVRPHPGGGAPYMGH* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00532 496 MobiDBLite consensus disorder prediction 1 133 - -
Pte5g00532 496 MobiDBLite consensus disorder prediction 48 66 - -
Pte5g00532 496 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 173 250 IPR000504 GO:0003723
Pte5g00532 496 SUPERFAMILY RNA-binding domain, RBD 256 364 IPR035979 GO:0003676
Pte5g00532 496 MobiDBLite consensus disorder prediction 344 398 - -
Pte5g00532 496 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 175 242 IPR000504 GO:0003723
Pte5g00532 496 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 272 340 IPR000504 GO:0003723
Pte5g00532 496 SUPERFAMILY RNA-binding domain, RBD 161 257 IPR035979 GO:0003676
Pte5g00532 496 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 270 346 IPR000504 GO:0003723
Pte5g00532 496 Gene3D - 59 257 IPR012677 -
Pte5g00532 496 MobiDBLite consensus disorder prediction 14 47 - -
Pte5g00532 496 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 71 347 - -
Pte5g00532 496 Coils Coil 72 93 - -
Pte5g00532 496 SMART rrm1_1 174 246 IPR000504 GO:0003723
Pte5g00532 496 SMART rrm1_1 271 343 IPR000504 GO:0003723
Pte5g00532 496 Gene3D - 258 381 IPR012677 -
Pte5g00532 496 MobiDBLite consensus disorder prediction 447 496 - -
Pte5g00532 496 MobiDBLite consensus disorder prediction 67 95 - -
Pte5g00532 496 MobiDBLite consensus disorder prediction 354 385 - -
Pte5g00532 496 MobiDBLite consensus disorder prediction 448 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00532 Pte-Chr5 5654294 5657720 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00532 266 349 C2H2 Transcription Factor Family AT2G19380 33.333 4.14e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00532 K12741 - qsa:O6P43_020877 539.65