Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00527 ATGATGGATTCCAGGGAAGAAAAAAAAAAGTCCAAGGGTCACCGATCTTCAAATTCTGTGGAAGAAGGTAATGGCAGGAAAAACTTGGGAGGTGAGGTTCATCTGAAAAAAGGCCCTTGGACATCTGCAGAAGATGCAATTTTGGTAGAATATGTCAAGAAGCATGGGGAAGGTAACTGGAATGCTGTTCAGAAGCACTCAGGGCTTGCCAGGTGTGGGAAAAGTTGCCGTCTGCGATGGGCAAATCACTTGAGACCAGATTTAAAGAAGGGTGCATTTAATCAGGAGGAGGAGGATCGTATTGTTGAACTCCACGCCAAATTTGGAAATAAATGGGCTCGAATGGCGGCTGAGTTGCCTGGACGAACAGATAATGAGATTAAGAACTTCTGGAATACAAGGATCAAGAAAATGCAACGAGCTGGTTTACCACTCTATCCTGCTGAGGTGTGTCTAAGAGTACTGAATCAAGAAACCCCTAATATGGGTGCGATAGTAGATCCAGAAAATCAGCACTGTGATCGTTTGCTGGCAGAGAACTGTGACATCACAGAAGTGGAATTTAAAAGCTTAAAATTTTCTCAAGGGCACCTGATTAACACTCCAACAGCTTTTGATGTGCCTGAAAGCAGCATGCTCAAACAGTTTGGGGACTCAAATCATAGTTATAATTCCATGCTTACTGCTTTTCACCCTCTAAAGCGCCTCCGAGAAACAGATACCTTTTATCATTATTTGGATGATAGTATCAGCAGCATTATCCCACTATCCGACACATCTCAACAGTTTATTGCCAGTAACCCTCTTGGTAGCCATGCCTTTTTAAATGGCAATTACTCTTCTTCTGAGCCCTTAAGTATGGCTATGAAGTCAGAGCTCCCTTCACTCCAATATTTAGAAACTCAATATGAAAGTTGGGGTACTCCTACGTCTCCACTTCATTCACTTGAGTCTGATACTTTGATTCAGTCACCTCAAACCGAACAGTCCGAATCAGATCCCATTAAACCACAAAGCAGTGGTTTGTTGGAAGCAATAGTATATGAATCACGAGTTTCGAAAGAATCTAACAGACAGCCAAAACCTATTACTTCTGCCGTGCCTAATTCAGACGAGAATTCATCCTTGAAATCTAGCCAGAAAGCATGTGATGACCACAGAGATCCAAAGTCTCCTCCGGGTCATTCTGCTGCATCAATTCTCAGTGAGCATACACCTGTCAGAATTTCCTCTATCTATGAATCTCAATCAATTGAGGCTACACAAGTCAAAGAGGATCCATCCTACTATGTGAAGGAGAAAGAGAAGCCCAATATTGACCTCACCAGGCCTGATGCTATGCTTGATCTTGGTTGGTTCACACAAAGGAATCAGGATCAATGCATTTTATCAGATGCTATTGGAGCACTTCTAGGTGAAAACTTTCATTATTGA 1434 0.4233 MMDSREEKKKSKGHRSSNSVEEGNGRKNLGGEVHLKKGPWTSAEDAILVEYVKKHGEGNWNAVQKHSGLARCGKSCRLRWANHLRPDLKKGAFNQEEEDRIVELHAKFGNKWARMAAELPGRTDNEIKNFWNTRIKKMQRAGLPLYPAEVCLRVLNQETPNMGAIVDPENQHCDRLLAENCDITEVEFKSLKFSQGHLINTPTAFDVPESSMLKQFGDSNHSYNSMLTAFHPLKRLRETDTFYHYLDDSISSIIPLSDTSQQFIASNPLGSHAFLNGNYSSSEPLSMAMKSELPSLQYLETQYESWGTPTSPLHSLESDTLIQSPQTEQSESDPIKPQSSGLLEAIVYESRVSKESNRQPKPITSAVPNSDENSSLKSSQKACDDHRDPKSPPGHSAASILSEHTPVRISSIYESQSIEATQVKEDPSYYVKEKEKPNIDLTRPDAMLDLGWFTQRNQDQCILSDAIGALLGENFHY* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00527 477 MobiDBLite consensus disorder prediction 357 377 - -
Pte5g00527 477 MobiDBLite consensus disorder prediction 351 402 - -
Pte5g00527 477 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 88 IPR017930 -
Pte5g00527 477 Gene3D - 36 89 - -
Pte5g00527 477 Pfam Myb-like DNA-binding domain 40 100 - -
Pte5g00527 477 CDD SANT 39 84 IPR001005 -
Pte5g00527 477 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 89 139 IPR017930 -
Pte5g00527 477 FunFam Transcription factor GAMYB 92 138 - -
Pte5g00527 477 FunFam MYB-related transcription factor 36 89 - -
Pte5g00527 477 CDD SANT 92 133 IPR001005 -
Pte5g00527 477 Gene3D - 92 158 - -
Pte5g00527 477 ProSiteProfiles Myb-like domain profile. 85 135 IPR001005 -
Pte5g00527 477 MobiDBLite consensus disorder prediction 321 340 - -
Pte5g00527 477 SMART sant 36 86 IPR001005 -
Pte5g00527 477 SMART sant 89 137 IPR001005 -
Pte5g00527 477 MobiDBLite consensus disorder prediction 1 36 - -
Pte5g00527 477 MobiDBLite consensus disorder prediction 1 33 - -
Pte5g00527 477 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 6 459 - -
Pte5g00527 477 MobiDBLite consensus disorder prediction 321 337 - -
Pte5g00527 477 ProSiteProfiles Myb-like domain profile. 32 84 IPR001005 -
Pte5g00527 477 SUPERFAMILY Homeodomain-like 34 131 IPR009057 -
Pte5g00527 477 MobiDBLite consensus disorder prediction 378 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00527 Pte-Chr5 5599131 5602128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00527 35 475 MYB Transcription Factor Family AT5G06100 40.249 4.41e-92 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte5g00527 Myb_DNA-bind_6 2.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00527 K09422 - qsa:O6P43_014646 544.273