Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00525 ATGTACATTACTATTTTTCCTGGGGATGCAGTGATCAGCCAAGTTTGGGAATATGATGCTCATGCTACCTTTTATGGTGACATGAAGGGTAACGAGACGATGCATGGAGCTTGCGGTTATGAAGATTTGTTCAAGCAAGGCTATGGTCTTGAAACAGTAGCATTAAGCACTGCTCTTTTTAAAAACGGATCGACGTGCGATGTTTGTTTTGAAATAATGTGTGTGCACTCGAAGTGGTGCAAGCCAGGCGCTGCTCCAATCCATGTTACAACCACCAATTTCTGTCCTCCAAACTATACCAAAACACATGATATTTGGTGCAACCCACCTCAAAAGCATTTTGATCTTTCCCTGCCAATGTTTCTCAAAATTGCAGAATTCAAAGCTGGGGTTGTACTTGTTTCATTTCGAAGAGTGATGTGTTTCAAGCGTGGTGGGATCCAATTTGAAGTGAAGGGAAACTCGTATTTGCAAAGAAAGCTTCAGGAAGTGGAAGGAGGAAGACACGCGAGGGAGAGAGAGTTTTTTATTTAG 534 0.4232 MYITIFPGDAVISQVWEYDAHATFYGDMKGNETMHGACGYEDLFKQGYGLETVALSTALFKNGSTCDVCFEIMCVHSKWCKPGAAPIHVTTTNFCPPNYTKTHDIWCNPPQKHFDLSLPMFLKIAEFKAGVVLVSFRRVMCFKRGGIQFEVKGNSYLQRKLQEVEGGRHAREREFFI* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00525 177 PRINTS Expansin/Lol pI family signature 34 52 IPR007118 GO:0005576
Pte5g00525 177 PRINTS Expansin/Lol pI family signature 16 31 IPR007118 GO:0005576
Pte5g00525 177 PRINTS Expansin/Lol pI family signature 56 74 IPR007118 GO:0005576
Pte5g00525 177 PRINTS Expansin/Lol pI family signature 129 145 IPR007118 GO:0005576
Pte5g00525 177 Gene3D - 9 141 IPR036908 -
Pte5g00525 177 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 35 146 IPR007112 -
Pte5g00525 177 Pfam Lytic transglycolase 52 135 IPR009009 -
Pte5g00525 177 CDD DPBB_EXPA_N 16 141 - -
Pte5g00525 177 SUPERFAMILY Barwin-like endoglucanases 15 156 IPR036908 -
Pte5g00525 177 PRINTS Expansin signature 104 121 IPR002963 GO:0009664
Pte5g00525 177 PRINTS Expansin signature 145 157 IPR002963 GO:0009664
Pte5g00525 177 PRINTS Expansin signature 73 84 IPR002963 GO:0009664
Pte5g00525 177 PRINTS Expansin signature 121 134 IPR002963 GO:0009664
Pte5g00525 177 PRINTS Expansin signature 47 61 IPR002963 GO:0009664
Pte5g00525 177 PRINTS Expansin signature 87 97 IPR002963 GO:0009664
Pte5g00525 177 PANTHER EXPANSIN-A15 16 159 IPR002963 GO:0009664
Pte5g00525 177 SMART dpbb_1 52 136 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00525 Pte-Chr5 5592921 5593569 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00525 18 167 Expansin Gene Family AT5G39300 65.563 4.64e-70 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00525 - - jre:108982611 236.884