LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte5g00522	ATGGCTGTTACCTTTGCAGATCTCCACACTGAATCCGGTCTCAAATCCCTTGAAGCCCACCTTTCTAACAAAACATATGTTTCTGGGGACCAAGTAACTAAGGATGATATTAAAGTATATGCAGCTGTCCTGGAGAAGCCAGGAGACGATTTCCCCAATGCTAGCAAGTGGTATGAGGCATTGTCTTCAATTCTTGCCTCAAGCTTCCCTGGTACAGCTGTAGGTGTAAGAGTTAGTGGTAAAGCTGTTCCAGCTGAAGCTGCTCCTGCTGCTGCAACGAAGGCTGCTCTTGCTGGAGATGAGGATGATGATGACCTTGATCTCTTTGGTGATGAGACTGAGGAAGATAAGAAGGCAGCAGAGGAGAGAGAAGCTGCTAAGAAAGCATCCTCCAAAAAGAAAGAGAGTGGAAAGTCTTCTGTTCTTATGGATATCAAGCCTTGGGATGATGAGACAGATATGAAGAAGCTAGAAGAGGCTGTCCGTGCTATTGAAATGCCCGGTCTTTTTTGGGGAGCATCAAAATTGGTTCCAGTGGGTTATGGGATTAAGAAGTTGCAGATCATGCTTACCATTGTGGATGATTTGGTGTCCGTTGATTCTCTGATTGAGGAGCATCTTACTGTCGAACCCTGCAATGAGCATGTTCAGAGCTGTGACATTGTTGCATTCAACAAGATTTAA	684	0.4488	MAVTFADLHTESGLKSLEAHLSNKTYVSGDQVTKDDIKVYAAVLEKPGDDFPNASKWYEALSSILASSFPGTAVGVRVSGKAVPAEAAPAAATKAALAGDEDDDDLDLFGDETEEDKKAAEEREAAKKASSKKKESGKSSVLMDIKPWDDETDMKKLEEAVRAIEMPGLFWGASKLVPVGYGIKKLQIMLTIVDDLVSVDSLIEEHLTVEPCNEHVQSCDIVAFNKI*	228

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte5g00522	227	Pfam	EF-1 guanine nucleotide exchange domain	140	227	IPR014038	GO:0003746\|GO:0006414
	Pte5g00522	227	SUPERFAMILY	eEF-1beta-like	135	227	IPR036219	-
	Pte5g00522	227	Gene3D	-	2	68	-	-
	Pte5g00522	227	ProSitePatterns	Elongation factor 1 beta/beta'/delta chain signature 2.	216	227	IPR001326	GO:0003746\|GO:0005853\|GO:0006414
	Pte5g00522	227	ProSitePatterns	Elongation factor 1 beta/beta'/delta chain signature 1.	102	110	IPR001326	GO:0003746\|GO:0005853\|GO:0006414
	Pte5g00522	227	PANTHER	EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER	8	227	-	-
	Pte5g00522	227	MobiDBLite	consensus disorder prediction	114	140	-	-
	Pte5g00522	227	CDD	EF1B	141	227	IPR014038	GO:0003746\|GO:0006414
	Pte5g00522	227	SMART	EF1_GNE_2	138	227	IPR014038	GO:0003746\|GO:0006414
	Pte5g00522	227	FunFam	Elongation factor 1-beta 1 like	132	227	-	-
	Pte5g00522	227	SUPERFAMILY	GST C-terminal domain-like	10	65	IPR036282	-
	Pte5g00522	227	Gene3D	-	131	227	IPR014717	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte5g00522	Pte-Chr5	5574154	5576026	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte5g00522	1	228	Eukaryotic Initiation Factors Gene Family	AT5G12110	73.362	2.05e-110	315

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte5g00522	K03232		-	cit:102619566	320.472