Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00521 ATGGCAGCAGGAGCAACGACAACCAACGAGAGCTTTGTAGTTGTCGAGAAGAAGAATCCAGAAACCCAACCGCTACAACAACAAAATTCCCAGGCTGTTTCGGTTTGTTCAGATGAAGACCATGCCAGCACGAAGCCTGTCCGTACCATCATCAACAAGCTTGTCAAGCATTCCCTCACTGAATTGCCTTGCTCGAGAAAGGTGGTGAGGATATCTGTCACCGACTGTTATGCCACCGACTCATCGAGCGACGAGGAGGAGGATGCTCCGGAGAAAAAAGAAGAGGGAGAACGCGAAGAAGGAGAAGCAAACTCTAGTGGGTCTGGGTCGGGCGGTGCTTGTGTGAACAAGTTTCGTCAACCGAGAGTGACGAAAGTTGTGAATGAGATAACAATTGAGGAGAGTTCCAAAAAGGGTGTTGGGAAGAGTTCTGGGAATGATCGGAGCTTGAAGAGATTCCGTGGGGTACGCCAAAGACCGTGGGGTAGATGGGCTGCCGAGATAAGAGAGCCAACTGGGAAGAGGCTTTGGCTAGGGACATATGACACAGCTGAAGAAGCTGCTATGGTTTATGATAGGGCTTCTATACAGTTCAGAGGATCCAATGCTTTTACCAATTTCCTCAAACCTCCTGAGGCTATGGCTTGA 648 0.4938 MAAGATTTNESFVVVEKKNPETQPLQQQNSQAVSVCSDEDHASTKPVRTIINKLVKHSLTELPCSRKVVRISVTDCYATDSSSDEEEDAPEKKEEGEREEGEANSSGSGSGGACVNKFRQPRVTKVVNEITIEESSKKGVGKSSGNDRSLKRFRGVRQRPWGRWAAEIREPTGKRLWLGTYDTAEEAAMVYDRASIQFRGSNAFTNFLKPPEAMA* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00521 215 Gene3D AP2/ERF domain 151 209 IPR036955 GO:0003700|GO:0006355
Pte5g00521 215 Pfam AP2 domain 152 200 IPR001471 GO:0003700|GO:0006355
Pte5g00521 215 CDD AP2 151 207 IPR001471 GO:0003700|GO:0006355
Pte5g00521 215 MobiDBLite consensus disorder prediction 75 116 - -
Pte5g00521 215 SUPERFAMILY DNA-binding domain 152 207 IPR016177 GO:0003677
Pte5g00521 215 SMART rav1_2 152 214 IPR001471 GO:0003700|GO:0006355
Pte5g00521 215 MobiDBLite consensus disorder prediction 18 38 - -
Pte5g00521 215 FunFam Ethylene-responsive transcription factor 2 151 209 - -
Pte5g00521 215 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 67 209 - -
Pte5g00521 215 ProSiteProfiles AP2/ERF domain profile. 152 208 IPR001471 GO:0003700|GO:0006355
Pte5g00521 215 PRINTS Ethylene responsive element binding protein signature 153 164 IPR001471 GO:0003700|GO:0006355
Pte5g00521 215 PRINTS Ethylene responsive element binding protein signature 174 190 IPR001471 GO:0003700|GO:0006355
Pte5g00521 215 MobiDBLite consensus disorder prediction 18 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00521 Pte-Chr5 5567629 5568884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00521 48 212 AP2-EREBP Transcription Factor Family AT4G27950 43.275 4.80e-32 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte5g00521 AP2 1.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00521 - - qsa:O6P43_017734 125.561