Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00518 ATGATGGATGCTTTTGATGCTATTGTTCGGCACAGAATGGCTGGAAGGCATCCAAACTTTGATGTCAGAGGGAGGTCTGCTACAGTTCCTGAACACGACTGTGGTGTTTTGAGTTCTGGTCCTTATGTAGGTGTCCATGGTCCGGTTCCCTTTTCTGGTGATACTCATAGAGCAGATCCCCGGTTAATTGATTCCAGTGAGTACTTTATTGGCCCCGGATTAGAAGATCTGAACGAACAGCTTACCATGAATGGTAGACAGGGAGCACCCCCGGCATCTCGTCCTTCAATTGAAGCAATGCCAACCATTAAGATCACGAATATGCATCTTCATGCCGACTCGCACTGTCCCGTCTGTCAAGAAAAATTTGAACTTGGCACAGAAGCCAGGCAGATGCCATGCAATCACATCTATCATTCGGACTGTATTCTCCCTTGGTTGGGTCAGCACAATACATGCCCTGTCTGTCGTGTTGAATTGCCTACTCAAGGTCATGTAAATTCTCAAAGTCGAAATTGGTCTGTAGGAAGTGCTGGTGGTGGCAGCAATGGTGAAACCACAAGCAGTGGTGATGATGGTCGGCCTGATCAAGGAAGGAGAAATCCATTTTCATTTCTCTGGCCATTCCGCTCATCGAGTTCAAGCCCTCATCAATACTCTGAGAGTGGAGGAAGCAGTTCTACAATAAGTAATGATCAGAACAATGCAATGGAACACAGTGGATGGCGCTATGTTGACTAG 741 0.4669 MMDAFDAIVRHRMAGRHPNFDVRGRSATVPEHDCGVLSSGPYVGVHGPVPFSGDTHRADPRLIDSSEYFIGPGLEDLNEQLTMNGRQGAPPASRPSIEAMPTIKITNMHLHADSHCPVCQEKFELGTEARQMPCNHIYHSDCILPWLGQHNTCPVCRVELPTQGHVNSQSRNWSVGSAGGGSNGETTSSGDDGRPDQGRRNPFSFLWPFRSSSSSPHQYSESGGSSSTISNDQNNAMEHSGWRYVD* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00518 246 Pfam Ring finger domain 115 157 IPR001841 -
Pte5g00518 246 SUPERFAMILY RING/U-box 96 163 - -
Pte5g00518 246 CDD RING-H2_RNF126-like 116 157 - -
Pte5g00518 246 FunFam E3 ubiquitin-protein ligase RING1-like 79 163 - -
Pte5g00518 246 ProSiteProfiles Zinc finger RING-type profile. 116 157 IPR001841 -
Pte5g00518 246 MobiDBLite consensus disorder prediction 206 238 - -
Pte5g00518 246 MobiDBLite consensus disorder prediction 167 191 - -
Pte5g00518 246 SMART ring_2 116 156 IPR001841 -
Pte5g00518 246 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 75 161 - -
Pte5g00518 246 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 163 IPR013083 -
Pte5g00518 246 MobiDBLite consensus disorder prediction 167 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00518 Pte-Chr5 5516187 5516927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00518 60 162 C3H Transcription Factor Family AT5G01980 41.905 2.06e-24 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00518 K11982 - gmx:100813674 267.314