Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00496 ATGGCTTTCACTCTAGATAGAAGTGAAGAGAATATGTTATTCACTGTCGAGTCAATGAAGTCGGTGCCTGCACCCTTCCTTGCAAAGACATATCAACTAGTTGATGATATTCGGACTGATCATATCGTATCTTGGGGTGAAGATGAAACCACCTTTGTTGTATGGAGGCCACCTGAGTTTGCCAGAGATCTACTACCTAACTATTTCAAGCACAACAACTTCTCAAGCTTTGTTAGACAACTCAACACATATGGTTTCAAAAAGGTAGTTGCGGATAGGTGGGAGTTTGCAAATGAGTACTTCAGAAAAGGAGCAAAGCATCTTCTCTCTGAAATCCACAGAAGAAAAGCCCCACAGCAACATAACCAACAACACTACATTAATGATCACCAATCCACACAGATTCTTCAGCTAGATGATCAAAACCTGTGTTGGATTGATAATCCAATATTACCATCTCCAACTTCAACCAAAGATATCCTCACTGCATTGTCTGAAGACAACGAAAGCTTAAGAAGGAAAAACCTAATGCTCCTGTCAGAACTCACCCACATGAAGAGTCTCTACAATGACATTATCTACTTTATCCAAAACCATGTACAACCTTTGCCTTGTGAACAAAGAAGTGGGTATGCTGTTCCAAAGCTGATAGAGTTGGATTCAGATCAAACAGGGGTTGCTGCCCAAACTGCAAAATATCGCTCGGTAAGTTCAGCTGAGGTCTCGAGCAATACTCTGAAGCTCTTTGGTGTTCCTCTATGTGGAAAAAAAAGATCCCACCCCTGA 786 0.4135 MAFTLDRSEENMLFTVESMKSVPAPFLAKTYQLVDDIRTDHIVSWGEDETTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKVVADRWEFANEYFRKGAKHLLSEIHRRKAPQQHNQQHYINDHQSTQILQLDDQNLCWIDNPILPSPTSTKDILTALSEDNESLRRKNLMLLSELTHMKSLYNDIIYFIQNHVQPLPCEQRSGYAVPKLIELDSDQTGVAAQTAKYRSVSSAEVSSNTLKLFGVPLCGKKRSHP* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00496 261 SUPERFAMILY "Winged helix" DNA-binding domain 23 115 IPR036390 -
Pte5g00496 261 Gene3D - 18 116 IPR036388 -
Pte5g00496 261 Pfam HSF-type DNA-binding 26 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pte5g00496 261 ProSitePatterns HSF-type DNA-binding domain signature. 65 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pte5g00496 261 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 20 206 IPR027725 -
Pte5g00496 261 SMART hsfneu3 22 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pte5g00496 261 PRINTS Heat shock factor (HSF) domain signature 26 49 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pte5g00496 261 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pte5g00496 261 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pte5g00496 261 FunFam Heat stress transcription factor B-4 18 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00496 Pte-Chr5 5071872 5073160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00496 20 260 HSF AT1G46264 49.658 3.39e-85 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pte5g00496 HSF_DNA-bind 1.5e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00496 K09419 - qsa:O6P43_014695 392.119