Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00490 ATGAACCTCAACTGCATCCCCATAAATGTGCTGATAAATGCTTGCTGGCATCCTATTTCCCTCCAACTGACCTGTCCAAGTTTACCATTGCTCATAGCTAGAGTTTTTGGTGCCAGCAATATCATCAAGTTTTTGCAGATAAGAGACCCAGTTTATGGGTGTGCAATGAGCAGCATGGTTTACGAGGCAAGTGCAAGGATAAAAGACCCAGTTTATGAGTGTGCAGGCGCAATTTGTCAGCCGCAGAAACAAGTTAATGAACTCCAAGCACAACTAGCTAAGGCACAAGCAGGTGAGACTGCTAGAGTTGCAAAAGGTTTGTCTGCGCTTCAGCCTGGTGGAGTTGGCATGATTCTTTGCAATGACAAGGATTCCACTAGGTTGTTGGGGCTGGTCTTCAAAGAGAGGAACACCATGCTACTTCTAAAAGCTGTAATATGGTTGGTTGTGACATTGGGTGTCAAGAAAAACCCAGAAGCAATGGATGCGATGTTGCGGGGACAGGACAGTGATGGAACACAGCAAAAAGTACAGGGACAGAGCAGTAATATCATCTAA 558 0.4516 MNLNCIPINVLINACWHPISLQLTCPSLPLLIARVFGASNIIKFLQIRDPVYGCAMSSMVYEASARIKDPVYECAGAICQPQKQVNELQAQLAKAQAGETARVAKGLSALQPGGVGMILCNDKDSTRLLGLVFKERNTMLLLKAVIWLVVTLGVKKNPEAMDAMLRGQDSDGTQQKVQGQSSNII* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00490 185 Pfam Lateral organ boundaries (LOB) domain 32 96 IPR004883 -
Pte5g00490 185 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 33 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00490 Pte-Chr5 5002106 5003302 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00490 24 96 AS2 family AT1G07900 63.514 1.76e-21 85.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pte5g00490 LOB 2e-15 No_clan