Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00485 ATGACTTCCATCGTGAAGGTCGACGATTGTGAAAGCCTTGTACATAGCTTTTCCGATCTGTATATCAAGCAACAGAATGAGGACCAGCAGAATGAAATGAGAAACGGACCAGAGGGTCAGGAGATGGGAAGTGGGAGTGAGTGCCATGGGGGAACTTGCGCAATATGCCTGGATAATATAGTGCTTCAGGAGACTGCTCTTATAAAAGGTTGCGAGCATGCTTACTGTGTGACTTGCATTCTGCAATGGGCCACATACAGTAAGGAACCAACCTGTCCTCAGTGTAAACATCCATTTGGGTTTCTCAATGTACATCGGTCTCTTGATGGCTGCCTTCAAGATTATTTATTAGAGGAGAGTGTTTGCCTACTTCTAAGGGCCTCGTGGTTTAAGCCGTTAGCAGTGGAAGATCACAAGTTTGAAGATGAGGATCTGTTTGATTATATGGATGACTATCATCTATACGACGATGATGACGACGATATGAATGATGATGACGATGAAGTCTACTACCCTGGCTCATCAAGTATACGTATTGGTAATAGGAGATGGGGTGAGAATGGCTACGTGAGGGCTGGACGCCAAGAAGCAAGGCCAGTTCATCGACATAATTTACAGGATGAAGGTGCCAGTTCGTCCCGTGAGCCAAGGAAGAAGGAGGTAGCAAAAAGTACTACAGGACGACGAGCAAAACGGGCACTCAAACGTGAAGCAGCTGACAAAGCGGCTGCAGCAAAACATCAGCAGCATTTGGCAAGGTTGGGTCGCAGCAAGTGA 777 0.4646 MTSIVKVDDCESLVHSFSDLYIKQQNEDQQNEMRNGPEGQEMGSGSECHGGTCAICLDNIVLQETALIKGCEHAYCVTCILQWATYSKEPTCPQCKHPFGFLNVHRSLDGCLQDYLLEESVCLLLRASWFKPLAVEDHKFEDEDLFDYMDDYHLYDDDDDDMNDDDDEVYYPGSSSIRIGNRRWGENGYVRAGRQEARPVHRHNLQDEGASSSREPRKKEVAKSTTGRRAKRALKREAADKAAAAKHQQHLARLGRSK* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00485 258 MobiDBLite consensus disorder prediction 193 258 - -
Pte5g00485 258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 100 IPR013083 -
Pte5g00485 258 SUPERFAMILY RING/U-box 52 102 - -
Pte5g00485 258 ProSitePatterns Zinc finger RING-type signature. 71 80 IPR017907 -
Pte5g00485 258 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 256 - -
Pte5g00485 258 Pfam Ring finger domain 52 96 IPR001841 -
Pte5g00485 258 MobiDBLite consensus disorder prediction 195 247 - -
Pte5g00485 258 ProSiteProfiles Zinc finger RING-type profile. 53 96 IPR001841 -
Pte5g00485 258 SMART ring_2 53 95 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00485 Pte-Chr5 4969895 4973372 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00485 1 256 C3H Transcription Factor Family AT5G19430 51.685 5.07e-80 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00485 - - qsa:O6P43_014716 304.679