Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00484 ATGGAAGAATTGAGTGAACCACATTCTGAAGAAAATAAGGCTGCTCAGGAGAAAAATAACAAGAGGCAACACAAAACACCTGCTCAGCTCAATGCTCTGGAGAAATTTTATGATGAGCACAAATATCCCACAGAGGAGATGAAAGCAGATCTTGCTGTGGAGCTTAGTTTGTCAGAGAAGCAAATATCTGGATGGTTTTGTCATAGAAGATTAAAGGACAAAAAGTTGTTGAGGGAGGAAGCACGCACTAGTGGCCGGCAAGATCGTTCTAGTAGGGTGATCCAGAGCCGTGAATATAGACAGGATTCATGTGGCAGCAGTAAACATGGTGATTACAAGCATGTTGATCCTAGAGAAGTGGAAAGCCAGGGAAATAGTGACCATCCTTTTCCAGCTACAGATCTGCCTTATGAGCGTAGGAGTAGCCACTACACAGATAATGTTAATGGAATGGGTAGTACGTCTTCTGAGAGTAGCTCATATTTACAAGAGAAATTGTATTCTGAGATTCAGGATCCTTATCATATGAGGGATGCAAGATACTTGAAAGATGATGGAGATTGGCCACCAATGATTTCCAAGAGGGGAATGGATACGGGATATAGACCATCAGGATATTTGAAAGTGAAGGGTGAAATTGTAAATGCAGCTATTACTGCTGTGAAGAAGCAATTAGGGAGGAACTATATGGAGGATGGTCCGCTGCTGTCTGTAGAATTTGACCAACTTCCTCCTGGTGCATTTGAGTCCGTTGCAGTGAATCCTGCCCATGAATCAGGTTATGTTGGGAATCCTACCGTCCCTAATCCTTCAAACATTCCTCAAGCGAAAACCCAACCTAGTCATAGCTCAAGATATGAACGTGATTCCAAGTTTAGCTCCCATGAACCGCACATGGAAGGGGAGAACCTTACACATGATTCTGGTTTCCTGGACAAGAAACTCCAACAGCATCTAAAGAAAAGGTCATCTTTTTATAATCATACGGATTCTTTCCCTGTCAGGAACTCTTTCGATAGATATGAAGATTCTATCAGAGATTCGTCTACTTATAAATGCAAAAGAGGTCACAGATTGAGCTCCAAGCATGGAAATGATGGAATGAGATCTGACTCTGGTTCTAACTATGGTGGTCGTTATGATGGAGAAAAGGTTACCATTGATCAAACAGAACTTTTGCCTCATGGCTATGATGATGGCAACACAAAGATGCGAGGTAGTGAATATTTTAAGCACAAACCTTCAACTTTGATGCATAGACATCATGATTTGGTCGATACAGAGGAAAGAGGTAGATCTATGTGGACAGAACAGGACAACTTTAGTGGCGAGAGGAAGGCAAATGATGATTTTATCAAAGGAAGGAAACGTCCAACAGATGAGATCAAGGTTGGAAAACAGAGCAGAATTGCTCTTCCTCCTCGCGATTGGATAAAGCAAAAACGTCTTACTGAGGTGTCACCCCTGCAAAAACAGAGGTGGGGATTTCATTTGGAGTGTGTGAGTATAATTACCACAGTCGGTCTCACATCATTGCATCATTGTCTTTGCATTCTCTGCAGACAGACAATTGCATGTGATGCTATGATTATCTGTCATTCTGAAACACGATCTTTCTAA 1620 0.4179 MEELSEPHSEENKAAQEKNNKRQHKTPAQLNALEKFYDEHKYPTEEMKADLAVELSLSEKQISGWFCHRRLKDKKLLREEARTSGRQDRSSRVIQSREYRQDSCGSSKHGDYKHVDPREVESQGNSDHPFPATDLPYERRSSHYTDNVNGMGSTSSESSSYLQEKLYSEIQDPYHMRDARYLKDDGDWPPMISKRGMDTGYRPSGYLKVKGEIVNAAITAVKKQLGRNYMEDGPLLSVEFDQLPPGAFESVAVNPAHESGYVGNPTVPNPSNIPQAKTQPSHSSRYERDSKFSSHEPHMEGENLTHDSGFLDKKLQQHLKKRSSFYNHTDSFPVRNSFDRYEDSIRDSSTYKCKRGHRLSSKHGNDGMRSDSGSNYGGRYDGEKVTIDQTELLPHGYDDGNTKMRGSEYFKHKPSTLMHRHHDLVDTEERGRSMWTEQDNFSGERKANDDFIKGRKRPTDEIKVGKQSRIALPPRDWIKQKRLTEVSPLQKQRWGFHLECVSIITTVGLTSLHHCLCILCRQTIACDAMIICHSETRSF* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00484 539 MobiDBLite consensus disorder prediction 77 157 - -
Pte5g00484 539 CDD homeodomain 21 75 IPR001356 GO:0003677
Pte5g00484 539 SMART HOX_1 18 80 IPR001356 GO:0003677
Pte5g00484 539 MobiDBLite consensus disorder prediction 77 123 - -
Pte5g00484 539 MobiDBLite consensus disorder prediction 1 32 - -
Pte5g00484 539 SUPERFAMILY Homeodomain-like 18 83 IPR009057 -
Pte5g00484 539 MobiDBLite consensus disorder prediction 1 24 - -
Pte5g00484 539 MobiDBLite consensus disorder prediction 349 365 - -
Pte5g00484 539 MobiDBLite consensus disorder prediction 142 157 - -
Pte5g00484 539 MobiDBLite consensus disorder prediction 282 307 - -
Pte5g00484 539 Gene3D - 14 81 - -
Pte5g00484 539 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Pte5g00484 539 MobiDBLite consensus disorder prediction 349 382 - -
Pte5g00484 539 Pfam Homeodomain 20 75 IPR001356 GO:0003677
Pte5g00484 539 MobiDBLite consensus disorder prediction 259 307 - -
Pte5g00484 539 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 503 - -
Pte5g00484 539 MobiDBLite consensus disorder prediction 264 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00484 Pte-Chr5 4898944 4903472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00484 6 399 Homeobox Transcription Factor Family AT4G03250 41.262 4.00e-66 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Pte5g00484 Homeodomain 1.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00484 - - qsa:O6P43_020989 481.87