Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00483 ATGTCGCGTACTGATAGGACGACTTCAGATCTTAATAGAACTGGCAATGTTGAGAGGGACATCGAGCAGGCTATTACTGCTTTAAAGAAAGGGGCATACTTACTGAAGTATGGCAGAAGGGGCAAGCCCAAATTTTGCCCCTTCCGACTTTCCAATGATGAATCTGTTTTAATATGGTTCTCGGGGAAAGAGGAGAAAGACCTCAAACTTAGTCATGTTTCTAGGATCATATCTGGACAGCGCACTCCTATCTTTCAAAGGTATCCACGGCCTGAAAAGGAGTACCAATCATTTTCTCTCGTATACAATGATAGGTCATTGGATGTGATCTGCAAAGATAAAGATGAAGCAGAGGTATGGTTTAGTGGTTTAAAAGCATTAATTTCACGCAGTCATCACCAGAAGTGGAGAACTGAATCAAAGAGTGATGGTTTTCCATCTGAAGTAAACAGTCCTCGAACATACACACGAAGAAGTTCCCCACTCAATACTCCATTTGGCGGCAAAGACAGCTTCCAAAAGGACCATGGAGATCAAGTTCGCCTTCATAGTCCTTATGAAAGTCCCCCAAAGAATGGTCTGGATAAAGCATTATCAGATTTAATCATGTATGCTGCTCCCCCTAAGGGATTCTTTCCGTCATCTGCTAGTATATCTGTGAACTCTTTATCTTCCGGAGGATCAGATAGTCTACATGACCATGTGAAAACATCTACCATGGATGCTTTTAGGGTTAGTTTGTCAAGTGCAGTTAGCTCTTCTAGTCAGGGATCTGGTCATGATGACGGAGATGCATTGGGTGATGTTTTTTTATGGGGGGAAGGTATAGGGGATGGTATTCTTGGTTGTGGACCTCACAAAGTTGGGAGTTGTGGTTTAAAAATGGATGCATTCTTTCCTAAAACCTTGGAATCTGCAGTAGTGCTAGATGTACAAAATATTGCATGTGGGGGACGACATGTTGCCTTAGTAACTAAACAAGGAGAAATTTTCTCCTGGGGGGAGGAATCGGGAGGCAGGCTTGGTCATGGGGTAGATTCTGATGTTATGCATCCGAAAATTATAGAAGCTCTAAGTAACACAAACATCGAACTTGTGGCATGTGGTGAGTATCATACATGTGCTGTAACACTTTCAGGAGATCTTTATACATGGGGCGATGGAACATACAACTTTGGTCTATTGGGGCATGTTAATGAAGTGAGCCATTGGGTTCCAAAGAGAGTAAATGGACCTTTAGAAGGCATACATGTATCATACATCTCTTGTGGTCCTTGGCACACAGCTGTTGTGACGTCTGCTGGGCAATTATTTACTTTTGGTGATGGCACATTTGGCGTTTTGGGCCATGGCGATAAAAAGAGTGTTTCAATACCTCGGGAAGTAGAATCCCTTAAGGGTCTCCGCACTGTGAGAGCTGCTTGTGGTGTTTGGCACACAGCTGCAGTTGTTGAAGTCATGGTTGGGAACACTAGTTCTAGCAATTGCTCTTCTGGGAAGTTGTTCACATGGGGAGATGGCGATAAAGGACGACTTGGGCATGGTGACAAGGAGGCAAAACTTGTGCCGACCTGCGTTGCTGCTCTCGTTGAACCTAAATTTTGCCAAGTTGCTTGTGGTCATAGTCTTACTGTTGCTCTTACAACCTCAGGCCACGTTTATACAATAGGTAGTCCTGTTTATGGTCAACTGGGACATCCTCAAGCGGATGGAAAGCTACCAGTCCGTGTAGAAGGGAAGCTGGCTAAGAATTTTGTAGAGGAGATTGCATGTGGTGCATACCATGTTGCTACCTTAACTTCAAGAACTGAAGTTTACACTTGGGGCAAGGGAGCAAATGGTCGTTTAGGACATGGGGATGCAGATGATAGAAATACTCCAACTTTGGTAGAAGCTCTTAAAGACAAACAAGTCAAGAGTATCGCCTGTGGTACCAATTTCACAGCAGCTATTTGCCTTCACAGGTGGGTATCTGGCATTGACCAGTCCGTGTGTTCTGGGTGCCGTGTACCATTTAATTTCAAAAGAAAACGTCACAATTGTTACAATTGTGGACTTGTATTCTGCCATGCATGTAGTAGTAAGAAGTCTTCTAAGGCTTCTATGGCACCAAATCCCAACAAACAGTATCGTGTCTGTGATAATTGTTTCAACAAACTACGGAAAACTATGGAATCGGATGCTCCATCTTATTCTTCAATGAGCAGAAGAGGAAGTATTAATCAGGCATCTGCTGAGTTTGTTGATAAAGATGACAAGTTGGATTCTAGAACTCATGCTCAGCTTGCAAGATTTTCTTCAAAAGGATCCTTGAAGCAAGTTGATACCCGATCCTCCAAGAAGAACAAGAAACTAGAATTCAACAGTAGTAGAGTATCACCTGTTCCTAATGGAACTTCTCAATGGGGAGCACTGAATATTCATAAATCTCTTAATCCCATGTTTGGATCATCTAAGAAGTTTTTCTCAGCTTCTGTGCCTGGATCAAGAATTGTTTCACGGGCAACATCTCCCATATCAAGACGACCCAGCCCACCCCGTTCCACCACCCCTACTCCAACATTGGGAGGACTAACCTCTCCAAAGTTAGCTGTGGATGATGTTAAAAGGACTAATGATAATCTTAGCCAGGAAGTTGCTATATTAAGTGCACAGGTTGAAAATCTCACCCGCAAAGCCCAACTTCAAGAATTTGAGCTGGAAAGTACAACTAAGCAGTTGAAGGAAGCAATAGCAATTGCAGGTGAAGAAACTGCAAAATGCAAAGCAGCAAAGGAAGTGATCAAGTCACTTACAGCCCAATTGAAGGATATGGCAGAGAGGTTGCCTATGGAAGCTGCTAGGACCGTCAAATCACCTTTCATTGCTTCCTTTAGTTCTAATCCACCTTCCAGTGAATTTTGCAACGTTGCCCTTGAGAGAACGAGTGTTCAACCAATAGGCCAAGAACAAGACTTAACTGTACCAAATGGTCAGTTCCTGGCTAATGGACTGGCCGCAAACAACAATCGTTGCTTTGCCCTTAACAAAGTGAATCAATCGGATGCAACAGCTAGGAGTGGGAGCAGAATGAAGGAAACTGAATCGCGTAACGAAACTGAATGGGTCGAACAGGATGAACCTGGCGTTTATATAACGCTTACCTCCCTTGCAGGAGGTGTAATTGATCTTAAGAGAGTTCGTTTCAGTAGGAAGCGGTTTAGTGAGAAGCAAGCAGAAAAATGGTGGGCAGAGAACCGTCAGAAAGTTTATGAGCAGTATAACGTGCGAATGATTGACAAATCAACTGTTGTTGGGAGTGAAGACTTGGCTCTTTGA 3318 0.4334 MSRTDRTTSDLNRTGNVERDIEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEEKDLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLVYNDRSLDVICKDKDEAEVWFSGLKALISRSHHQKWRTESKSDGFPSEVNSPRTYTRRSSPLNTPFGGKDSFQKDHGDQVRLHSPYESPPKNGLDKALSDLIMYAAPPKGFFPSSASISVNSLSSGGSDSLHDHVKTSTMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFLWGEGIGDGILGCGPHKVGSCGLKMDAFFPKTLESAVVLDVQNIACGGRHVALVTKQGEIFSWGEESGGRLGHGVDSDVMHPKIIEALSNTNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHVNEVSHWVPKRVNGPLEGIHVSYISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDKKSVSIPREVESLKGLRTVRAACGVWHTAAVVEVMVGNTSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPKFCQVACGHSLTVALTTSGHVYTIGSPVYGQLGHPQADGKLPVRVEGKLAKNFVEEIACGAYHVATLTSRTEVYTWGKGANGRLGHGDADDRNTPTLVEALKDKQVKSIACGTNFTAAICLHRWVSGIDQSVCSGCRVPFNFKRKRHNCYNCGLVFCHACSSKKSSKASMAPNPNKQYRVCDNCFNKLRKTMESDAPSYSSMSRRGSINQASAEFVDKDDKLDSRTHAQLARFSSKGSLKQVDTRSSKKNKKLEFNSSRVSPVPNGTSQWGALNIHKSLNPMFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLTSPKLAVDDVKRTNDNLSQEVAILSAQVENLTRKAQLQEFELESTTKQLKEAIAIAGEETAKCKAAKEVIKSLTAQLKDMAERLPMEAARTVKSPFIASFSSNPPSSEFCNVALERTSVQPIGQEQDLTVPNGQFLANGLAANNNRCFALNKVNQSDATARSGSRMKETESRNETEWVEQDEPGVYITLTSLAGGVIDLKRVRFSRKRFSEKQAEKWWAENRQKVYEQYNVRMIDKSTVVGSEDLAL* 1106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00483 1105 Pfam FYVE zinc finger 655 721 IPR000306 GO:0046872
Pte5g00483 1105 SUPERFAMILY RCC1/BLIP-II 267 656 IPR009091 -
Pte5g00483 1105 SUPERFAMILY PH domain-like 20 128 - -
Pte5g00483 1105 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 328 379 IPR000408 -
Pte5g00483 1105 Gene3D - 219 485 IPR009091 -
Pte5g00483 1105 SMART fyve_4 653 722 IPR000306 GO:0046872
Pte5g00483 1105 Pfam Pleckstrin homology domain 22 128 IPR001849 -
Pte5g00483 1105 PRINTS Chromosome condensation regulator RCC1 signature 421 437 IPR000408 -
Pte5g00483 1105 PRINTS Chromosome condensation regulator RCC1 signature 540 558 IPR000408 -
Pte5g00483 1105 PRINTS Chromosome condensation regulator RCC1 signature 437 451 IPR000408 -
Pte5g00483 1105 PRINTS Chromosome condensation regulator RCC1 signature 380 396 IPR000408 -
Pte5g00483 1105 PRINTS Chromosome condensation regulator RCC1 signature 311 324 IPR000408 -
Pte5g00483 1105 PRINTS Chromosome condensation regulator RCC1 signature 330 346 IPR000408 -
Pte5g00483 1105 PRINTS Chromosome condensation regulator RCC1 signature 598 619 IPR000408 -
Pte5g00483 1105 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 380 434 IPR000408 -
Pte5g00483 1105 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 659 721 IPR017455 -
Pte5g00483 1105 Pfam Regulator of chromosome condensation (RCC1) repeat 379 431 IPR000408 -
Pte5g00483 1105 Pfam Regulator of chromosome condensation (RCC1) repeat 550 598 IPR000408 -
Pte5g00483 1105 Pfam Regulator of chromosome condensation (RCC1) repeat 328 376 IPR000408 -
Pte5g00483 1105 Pfam Regulator of chromosome condensation (RCC1) repeat 498 547 IPR000408 -
Pte5g00483 1105 Pfam Regulator of chromosome condensation (RCC1) repeat 604 651 IPR000408 -
Pte5g00483 1105 Pfam Regulator of chromosome condensation (RCC1) repeat 435 483 IPR000408 -
Pte5g00483 1105 CDD FYVE_like_SF 665 717 - -
Pte5g00483 1105 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 473 483 IPR000408 -
Pte5g00483 1105 Pfam Transcription factor regulating root and shoot growth via Pin3 1032 1087 IPR013591 -
Pte5g00483 1105 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 499 550 IPR000408 -
Pte5g00483 1105 Coils Coil 921 941 - -
Pte5g00483 1105 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 668 728 IPR013083 -
Pte5g00483 1105 SUPERFAMILY FYVE/PHD zinc finger 655 726 IPR011011 -
Pte5g00483 1105 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 551 602 IPR000408 -
Pte5g00483 1105 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 603 654 IPR000408 -
Pte5g00483 1105 MobiDBLite consensus disorder prediction 143 167 - -
Pte5g00483 1105 CDD PH_PLC_plant-like 19 129 - -
Pte5g00483 1105 Gene3D - 492 667 IPR009091 -
Pte5g00483 1105 MobiDBLite consensus disorder prediction 138 191 - -
Pte5g00483 1105 FunFam PH, RCC1 and FYVE domains-containing protein 1 489 660 - -
Pte5g00483 1105 MobiDBLite consensus disorder prediction 764 801 - -
Pte5g00483 1105 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 435 486 IPR000408 -
Pte5g00483 1105 MobiDBLite consensus disorder prediction 833 861 - -
Pte5g00483 1105 Pfam Unstructured region between BRX_N and BRX domain 957 1026 - -
Pte5g00483 1105 Pfam Transcription factor BRX N-terminal domain 916 948 IPR027988 -
Pte5g00483 1105 Gene3D - 20 137 IPR011993 -
Pte5g00483 1105 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 267 327 IPR000408 -
Pte5g00483 1105 FunFam PH, RCC1 and FYVE domains-containing protein 1 238 488 - -
Pte5g00483 1105 Coils Coil 865 906 - -
Pte5g00483 1105 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 421 431 IPR000408 -
Pte5g00483 1105 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 64 936 - -
Pte5g00483 1105 ProSiteProfiles BRX domain profile. 1033 1088 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00483 Pte-Chr5 4876940 4884943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00483 925 1097 Major Intrinsic Protein MIP AT1G31880 29.353 4.58e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00483 - - cave:132163343 1810.81