Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00475 ATGACAGTTAAGGAGGACCATAAGATTGTTGACAGAAAACATGTCTTGGTTTGTATAAATTTGGTCAGAGAAAGCAGAGAGTTGCTAGACTGGGCTCTTGTCAAAGTTGCTGAACCTGGAGATTCTGTTATTGCAGTTAATGTTTGTCGTCGTTCTGATGAGGTTGACAGAGACAAGAAACTGTTGGATGGTTATTTGAAGGTCTACGATGGCCTCAGCCATTTAAAAAATGTTGAACTTACTGGTGAAGTATTGACAGGAAAGTCTATACGCAAAACTCTATTAAGAGAAGTAGAGAATCGTGCTGCTGTGGCAGTAGTGGTAGGAGTAAGCAAACACAGGAGCATAGGGGAGGATCCAATCGAGTGTACAGAGGAAATCTCCCCTGACGGTAAGCAAGTTGCAGTGAAAGTTCTACAGTCATCAAAAGAAGCTAGGAAGGATTTTGCACGTGAAGTTGAAATCATCTCGTCTTTAAAACATAAAAACATTACTTCCTTGTTTGGAGTTTCCCATGAAGATAATGCTTTGATATCTGTGTATGAATACTTCCCCAGAGGAAGCTTGGAGGAGAACTTGCACGGTAAGGCTATTTGGAACGGTTTGTTAGCAAAAATAAGTACTAATGAAATATCCTGCCATTTAAAATTTGACATAAATGCAGGCAAGACTAGCCATGAGTCATGTTTATCTTGGGAGGCCAGATTTAATGTAGCAATTGGAGTTGCTGAAGCTCTCCATTACTTGCACAAGGAATGCCCAAAACCTGTGATTCATAGAGATGTTAAGTCTTCCAATATTCTTCTTTCGGACAAGTTTGAGCCACAGTTGTCTGATTTTGGTCTTGCAATATGGGGACCAACTACTTCAACGTCTCTGACTCAAGAAGATATTGTTGGAACATTTGGTTACCTTGCTCCTGAGTATTTTATGTATGGCAAGGTCAGTGACAAGATTGACGTCTATGCCTTTGGCGTAGTGCTGCTTGAACTAATATCAGGAAGAAGCCTATTGGCTCTGAGGACACCAAAAGGACAGGAGAGCTTGGTGATGTGGGGACCAATCATAAAGAATGGTGATGTAAAAGACCTACTGGATCCAAATTTGGATGACAAGTTCAATGCGGTTGAAATGCAGAGAATGGTGCTTGCAGCATCCTTATGCATCACTAGAGCAGCTAGGATTCGTCCCCAAATAGACCAGATATTGGAGATCCTGAAGGGGGACAAAGATGTTAATAAGTTCAGGAATCCCCAAGTGGACAACCATGAGGACTCAGAAGAGCAGGAAAATACAGATGATGATGAAGTTTATCCAAACTCTAGTGCAGATTTGCACCGAAGTCTTGGCACTGCTTGA 1359 0.415 MTVKEDHKIVDRKHVLVCINLVRESRELLDWALVKVAEPGDSVIAVNVCRRSDEVDRDKKLLDGYLKVYDGLSHLKNVELTGEVLTGKSIRKTLLREVENRAAVAVVVGVSKHRSIGEDPIECTEEISPDGKQVAVKVLQSSKEARKDFAREVEIISSLKHKNITSLFGVSHEDNALISVYEYFPRGSLEENLHGKAIWNGLLAKISTNEISCHLKFDINAGKTSHESCLSWEARFNVAIGVAEALHYLHKECPKPVIHRDVKSSNILLSDKFEPQLSDFGLAIWGPTTSTSLTQEDIVGTFGYLAPEYFMYGKVSDKIDVYAFGVVLLELISGRSLLALRTPKGQESLVMWGPIIKNGDVKDLLDPNLDDKFNAVEMQRMVLAASLCITRAARIRPQIDQILEILKGDKDVNKFRNPQVDNHEDSEEQENTDDDEVYPNSSADLHRSLGTA* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00475 452 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 12 117 - -
Pte5g00475 452 SMART serkin_6 92 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte5g00475 452 ProSiteProfiles Protein kinase domain profile. 75 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte5g00475 452 FunFam Putative receptor-like serine/threonine-protein kinase 184 422 - -
Pte5g00475 452 Pfam Protein tyrosine and serine/threonine kinase 129 336 IPR001245 GO:0004672|GO:0006468
Pte5g00475 452 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
Pte5g00475 452 MobiDBLite consensus disorder prediction 414 452 - -
Pte5g00475 452 Gene3D HUPs 12 121 IPR014729 -
Pte5g00475 452 PANTHER OS08G0249100 PROTEIN 129 434 IPR046958 -
Pte5g00475 452 Gene3D Transferase(Phosphotransferase) domain 1 216 435 - -
Pte5g00475 452 Gene3D Phosphorylase Kinase; domain 1 122 191 - -
Pte5g00475 452 CDD USP_Like 14 101 - -
Pte5g00475 452 SUPERFAMILY Protein kinase-like (PK-like) 130 406 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00475 Pte-Chr5 4796651 4799436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00475 106 417 Trihelix Transcription Factor Family AT1G70460 38.245 7.18e-61 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Pte5g00475 PK_Tyr_Ser-Thr 1.7e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00475 - - qsa:O6P43_002122 415.616