Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00470 ATGAGTGTTATTCTCAAGAGATCTTTATCCATGTCCTCAAGACGAACTATGGCTGCCTTGGCTTCAATGGATTCGGTTCTATGCAACATACAACTTCAGTTGAACCCAACTTCTACTATGCTTTCAAGAAATACTGAACATCTAGGTGAAACTAGATCTTTCTCTTCTCTCGTGGGTGCGCCAAAGGCTGTTTCGGATGTTAAAGCGCGAAGCTTTCACGCGGCAGCTGGGCCATTGAATTTTAGATCATCATTGGTTTCTCAAGCCGAGGTCGCTACAGCGCGCGAGTATTCATGCGATGAAGAGAAGGGATCAAAGGGAGACAGTGACGAAGGGCTTGAAATCGCGAAACTTGGAATTTCGCAACAAATTGTTTCTGCTTTGGCCAAGAAAAATATCATGAAGCTCTTTCCCATTCAGAGAGCTGTGCTGGAGCCTGCAATGCAAGGGCGTGATATGATTGGTAGGGCCAGAACCGGAACAGGGAAAACGCTTGCTTTCGGTATACCCATTATGGACAAGATTATTCGACATAATGCTACACATGGGGAGGGCAAATATCCGCTGGCAGTGGTTATGGCACCAACGAGGGAACTGGCCAATCAAGTTAATAAAGAATTTTCTGAGGCTGCTCCTGAATTACTGACACTCTGTATTTATGGGGGTGTACCATTAGGGAACCAAATGAGGCAGCTTGACAGGGGTGTGGATGTTGTAGTTGGTACGCCTGGTCGACTGATCGATCTTATGAACAGAGGTGCACTAGTGTTGTCAGAAGTTCAATTTTTGGTTCTTGATGAAGCTGACCAGATGCTTCAAGTCGGCTTTCAAGAGGATGTCGAGAGAATCATGGAGAGATTGCCTAAGCAGCGTCAGAGTGTAATGTTCTCTGCAACAATGCCAACTTGGATAAAAGATCTTTCACGCAAGTACCTTAGAGATCCATTAATTATTGACCTTGTTGGAGACTCTGATCAGAAGTTGGCAGATGGAATTTCTCTATACTCTATCATGTCTAACATGTATGGAAAAGCATCGATAATTGAACCTCTTGTAACAGAGCATGCAAAGGGAGGAAAATGTATAGTTTTCACTCAAACCAAGCGTGATGCTGATAGGTTATCTCATGCTATGGAGGGGAAGCTTAAATGCCAGGCCTTGCATGGGGATATATCACAAAGCCAAAGAGAAAGAACTCTTTCTGGTTTTCGAGAAGGTTATTTCAATGTTTTAGTTGCAACTGATGTTGCTGCCCGTGGGCTGGATGTTCCTAATGTTGATCTTGTGATACACTATGATCTCCCAAATTCTTCAGAAATCTTTATTCATAGATCGGGGCGAACAGGTCGTGCTGGGAAGTCAGGAACTGCTATCCTTATATATTCACAAGATCAAGCAAAGACGACTAGGTTGATTGAAAGGGATGTTGGTCGCAGATTTACTGAGCTTCCGAAGATAAATGTTGATGGTGGGGCTATAGACATGTTCGGTGATGTGGGTGGTGGTGGTGGACAATATGGCTCAAGTGGCATGAGGTTTGGCCGAAGTGGTGGCTATGGTGATTCTGGGTATGGAAGAAGTGGGGGCTATGGTAATTCTGGATCTGCCCAAAGTGGGAGCTATGGGAGTTCTAGATTTGGTAACTCTTCAAGCGCTGGTCGCTTTGGTTCTTTTGGTGGTGCTAGTTCAAGCCAGTCAGGAAGTAGTTTTGGGGGCAATCGTTTTGGACAATCAAGTAGATTTGGTCAACAGGGTGGTTCTGGCGAGCCTAAGGGCTCAGATCGATCTGGTGGATTTGATAGTTTTGGATCAGGCCGTCGTGCTGGATTTGGGAACTTGAGATCAAGCCCAAGTTCTAGCTTTGTTAGACGTTTTGGTGATGACCGCTCTGATGGTCAGGATGATGGATCTTTCTAA 1917 0.4491 MSVILKRSLSMSSRRTMAALASMDSVLCNIQLQLNPTSTMLSRNTEHLGETRSFSSLVGAPKAVSDVKARSFHAAAGPLNFRSSLVSQAEVATAREYSCDEEKGSKGDSDEGLEIAKLGISQQIVSALAKKNIMKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKIIRHNATHGEGKYPLAVVMAPTRELANQVNKEFSEAAPELLTLCIYGGVPLGNQMRQLDRGVDVVVGTPGRLIDLMNRGALVLSEVQFLVLDEADQMLQVGFQEDVERIMERLPKQRQSVMFSATMPTWIKDLSRKYLRDPLIIDLVGDSDQKLADGISLYSIMSNMYGKASIIEPLVTEHAKGGKCIVFTQTKRDADRLSHAMEGKLKCQALHGDISQSQRERTLSGFREGYFNVLVATDVAARGLDVPNVDLVIHYDLPNSSEIFIHRSGRTGRAGKSGTAILIYSQDQAKTTRLIERDVGRRFTELPKINVDGGAIDMFGDVGGGGGQYGSSGMRFGRSGGYGDSGYGRSGGYGNSGSAQSGSYGSSRFGNSSSAGRFGSFGGASSSQSGSSFGGNRFGQSSRFGQQGGSGEPKGSDRSGGFDSFGSGRRAGFGNLRSSPSSSFVRRFGDDRSDGQDDGSF* 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00470 638 SMART helicmild6 372 452 IPR001650 -
Pte5g00470 638 MobiDBLite consensus disorder prediction 558 590 - -
Pte5g00470 638 Pfam Helicase conserved C-terminal domain 345 452 IPR001650 -
Pte5g00470 638 MobiDBLite consensus disorder prediction 624 638 - -
Pte5g00470 638 CDD SF2_C_DEAD 344 461 - -
Pte5g00470 638 Gene3D - 335 492 IPR027417 -
Pte5g00470 638 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 144 318 IPR014001 -
Pte5g00470 638 CDD DEADc 124 319 - -
Pte5g00470 638 MobiDBLite consensus disorder prediction 558 638 - -
Pte5g00470 638 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 347 491 IPR001650 -
Pte5g00470 638 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 473 IPR027417 -
Pte5g00470 638 Pfam DEAD/DEAH box helicase 137 306 IPR011545 GO:0003676|GO:0005524
Pte5g00470 638 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 100 485 - -
Pte5g00470 638 SMART ultradead3 132 335 IPR014001 -
Pte5g00470 638 Gene3D - 114 322 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00470 Pte-Chr5 4701950 4705533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00470 118 484 Eukaryotic Initiation Factors Gene Family AT3G19760 32.461 4.42e-61 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00470 - - qsa:O6P43_014734 698.353