Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00468 ATGGATTTTCTTTGTGGATTTCATATTGTACAGATTTTGAATTTGGGGTCAGCTATGAGCAATTGTGTTACCCCTTGGAATTTAGAGAGTGATGGATTTATGGCAAATACAAAGAGGCCCATGGGGGCAGACCAGGAACTGGTAGAGCTCCTGTGGCAAAATGGTCAGGTTGTTTTGCATAGCCAAGGAAATCGAAAAACAAATGAACAATCTAACGATGCATGGCAAGACTCGAAACACGATCAACTGGAACAAAGAAGTATCGGCACATATGCAAGTCCAAGCAATTTGATTCAAGCAGATGAAACTCTATCATGGATCCACTGTCCACTGGATGATTCATTTGAGAAAGACTTTGCTTCCAACTTTTTCCCTGAGCTGCAAACATGTGATGTTGAGGCTAGTAAGCATATCAAACACCTTGAAGAGAAAATTATTAAGTTTAGTGATCTCAATGTCCAAGAGTTCTCAGGAGATGCTATGCCTCCTCCTGGATTTCGATTCTCCAATCCATTCGAGCAAAATCAGGATTCATGCGGACTCGAAAAGGTTGTCAGGTTTTCTGGGTTTAGCACCCGCTTTAAGGGTGCTTCGGGAACCTGTAAGGGAAAAGATAAAGCTTTTATTCCTCAAAATGAAGGCAAAGAGAGTTCAGTTATGACTTTAGGTTCAAGTCATTGTGGCAGCAATCAGTTTTCCCAAGACGTCAATATCAGCCGAGCATCAACCAATGCGATGAGGACTCATAATGTACCAGATGACCCCTTAAAAGATGATATGCAGAAAGTTCATGGTGACAGCGATCACAATATGTCAGAGACACTTGAACCAACATTCACTTTTTCTTCAGGTGTCTCCGGTAGCAGTTATGGAAAAACACACAGCAAAAGGAAGGTAAGAGAAGCAGAGGAATCAGAAGATCAAAGTGAGGCTACAGAGCTCAAATCGGCAGCTGGAAACAGGTCATCACAACGAGCAAGCTCGTCAAGGAAGGCTCGAGCAGCTGAAGTTCATAATCTCTCAGAACGAAGACGAAGAGATAGGATTAATGAGAAGATGAGGGCTTTGCAAGAACTATTGCCACACTCCAACAAGACAGATAAAGCATCTATGCTAGATGAAGCAATTGAGTACTTGAAGTCACTTCAGTTACAACTTCAGGTGATGTGGATGGGAACTGGTATGAGACCAATAATGTATCCTGGAGTTCAGCACTATATGCCTAGAGTTGGAGTGGGAATGGCCACAACTTCTTTGCCTCATTTTCATAATCCTATGCATTTTCCAAGAATGCAACTAGTTGATCAGTCTATACCTGTTGCTCAAACACCAGCTCAAGCTATGATGTGCCAAACCCCAGTTTTGCCTTCTGTTCATTACCAAAGTCAGATGCAGAATCCTAATTTTTCTCAGCAATATGCACGTTACATGGGATTCCATCTCATGCAAAACCCATCACAGGCAATGAATATGCTCAACTATGGTCCCCAAGTAGTACAGCCTGGTCAAACAATGATGCCTCCTAGCAATAGCAGCTTACCCCATGGTGAAAGAGCTAATGCTGATCATCCCGTGACTGGCAAAATGGGTAAGTAA 1596 0.4248 MDFLCGFHIVQILNLGSAMSNCVTPWNLESDGFMANTKRPMGADQELVELLWQNGQVVLHSQGNRKTNEQSNDAWQDSKHDQLEQRSIGTYASPSNLIQADETLSWIHCPLDDSFEKDFASNFFPELQTCDVEASKHIKHLEEKIIKFSDLNVQEFSGDAMPPPGFRFSNPFEQNQDSCGLEKVVRFSGFSTRFKGASGTCKGKDKAFIPQNEGKESSVMTLGSSHCGSNQFSQDVNISRASTNAMRTHNVPDDPLKDDMQKVHGDSDHNMSETLEPTFTFSSGVSGSSYGKTHSKRKVREAEESEDQSEATELKSAAGNRSSQRASSSRKARAAEVHNLSERRRRDRINEKMRALQELLPHSNKTDKASMLDEAIEYLKSLQLQLQVMWMGTGMRPIMYPGVQHYMPRVGVGMATTSLPHFHNPMHFPRMQLVDQSIPVAQTPAQAMMCQTPVLPSVHYQSQMQNPNFSQQYARYMGFHLMQNPSQAMNMLNYGPQVVQPGQTMMPPSNSSLPHGERANADHPVTGKMGK* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00468 531 FunFam Basic helix-loop-helix transcription factor 328 391 - -
Pte5g00468 531 MobiDBLite consensus disorder prediction 272 292 - -
Pte5g00468 531 Pfam Helix-loop-helix DNA-binding domain 337 383 IPR011598 GO:0046983
Pte5g00468 531 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 330 395 IPR036638 GO:0046983
Pte5g00468 531 Gene3D - 328 389 IPR036638 GO:0046983
Pte5g00468 531 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 333 382 IPR011598 GO:0046983
Pte5g00468 531 MobiDBLite consensus disorder prediction 294 311 - -
Pte5g00468 531 MobiDBLite consensus disorder prediction 251 271 - -
Pte5g00468 531 PANTHER TRANSCRIPTION FACTOR PIF3 36 503 IPR044273 GO:0003700|GO:0006355
Pte5g00468 531 MobiDBLite consensus disorder prediction 312 330 - -
Pte5g00468 531 SMART finulus 339 388 IPR011598 GO:0046983
Pte5g00468 531 MobiDBLite consensus disorder prediction 331 348 - -
Pte5g00468 531 CDD bHLH_AtPIF_like 333 395 IPR047265 -
Pte5g00468 531 MobiDBLite consensus disorder prediction 505 531 - -
Pte5g00468 531 MobiDBLite consensus disorder prediction 246 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00468 Pte-Chr5 4673315 4676395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00468 19 478 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G59060 34.221 7.32e-56 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte5g00468 HLH 2.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00468 K16189 - qsa:O6P43_021016 496.508