Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00466 ATGAGACCCTCTTCGTCTGGGTTCAATCAACAGGCTCAGGAAGGGGAAACGAAATGCTTGAATTCTGAACTGTGGCATGCGTGTGCTGGCCCTCTGGTGTCTCTTCCTCCTGTTGGGACTCGTGTCGTCTACTTCCCTCAGGGTCACAGTGAGCAGGTTGCTGCTTCGACTAATAAGGAAGTGGATGCACATATTCCAAATTACCCTAACTTGTCACCACAGCTTATTTGTCAACTCCATAATGTGACGATGCATGTAAGAATTTGTTTAAATGGAGACTTATTGGTAATATTCCACGTTACCTCTGTAATCTGCCCCTTTTTTTTTGACTCGCAGGCAGATGTAGAAACTGATGAAGTTTATGCTCAAATGACCTTGCAACCTCTGAGTCCGCAAGAGCAAAAGGATGTATACCTACTCCCTGCAGAATTGGGTTCTCCAAGCAAACAGCCGACCAACTATTTCTGTAAAACACTTACTGCCAGTGACACAAGCACTCATGGAGGGTTCTCTGTTCCTCGACGAGCAGCTGAAAAAGTCTTTCCTCCTCTTGATTATTCGCTACAGCCTCCTGCACAAGAACTCATTGCAAGAGATCTCCACGATAACGAATGGAAGTTTAGACATATATTTCGAGGTCAGCCTAAAAGACATCTTCTTACTACTGGATGGAGTGTGTTCGTTAGTGCAAAGAGACTTGTTGCTGGTGATTCAGTTATTTTCATTTGGAATGATAAAAATCAATTACTCTTGGGGATTCGGCATGCAAATCGTCACCAGATGATCATGCCTTCGTCAGTTCTCTCAAGTGACAGTATGCATATTGGTCTTCTTGCTGCTGCAGCCCATGCAGCAGCTACCAACAGTCGCTTTACAATATTCTATAACCCAAGAGCAAGTCCCTCGGAGTTTGTAATTTCCTTGGCCAAGTATGTGAAAGCTGTCTATCATACACGTGTTTCTGTTGGTATGCGATTCAGAATGCTGTTTGAGACAGAAGAATCAAGTGTCCGACGCTACATGGGTACTATAACAGGTATTAGTGATTTAGATCCTGTTCGCTGGCCAAATTCACATTGGCGCTCTGTGAAGGTTGGGTGGGATGAATCCACTGCAGGGGAAAAACAACCAAGAGTTTCATTGTGGGAAATTGAACCACTGACAACCTTCCCTATGTATCCATCTCCTTTCCCACTTAGGTTGAAGCGTCCTTGGCCATCGGGAATGCCTCCTCTTCAAGGTCTCAAGGATGGTGATATGGGCCTTAATTCTCCATTGATGTGGCTGCAAAGCGGGCTAGGAGATCAAGGAATTCCTACTTTGAACTTTCAAGGACTTGGTGTTACACCTTGGATGCGGCCTAGACTTGATACTTCTTTGTCTGGTCTGCAGCCTGAGTTATACCAAGCTATGGCTACTGCTGCACTGCAAGAGATGAGGACGATTGATCCCTCCAAATGCTCTCCACAATCTTTATTACAGTTTCAGCAAAGTATTCCTAATGCTCCTATTTCAGTAATTCAGAGGCAAATGTTGCAGCATTCCCAATCCCAAAATTCTTTACTTCAGAGCTTACAAGAAAATCAGCTGTCTTCTCAGCCTCAACTGCTCCAGCACCAGCCACAGCGCTATCATCCATTCAATGATCACCAGCAACATCAGCAACAATCACCATCTCAGCAGCTTCAGCATTCCCAACAAATTCATAATGTGGCTGCTCAGCATCAACTTCCAACCACCATGTCATCTTTGTCCAATTTTTCATCAGCATACCATTCCCAATCTCCATCACTGCAGACCATCACTTCACACAGTCAGCAGCTGGGTCTCTCTGAAAGTTGCAGGAATCTTATTTCTACTACTGAGGTTTCCCCCATTCACGGTTTATTAGGAGCATTGACTCAGGATGGAGCCTCACACTTATTTAATATGAGTGGATCCAATCCTGTAATCTCTTCTGCTGCTTCCCAGTGTGTACTGCCCCAGGTTGATCACATTGGTGCACCACAATCAAATGTATCTGAACTTGCCGGTTTACCTCCGTTTCCTGGAAAAGAGTTTCCCACATCCTATGGTGCAACTGACCCACAAAACAATCTCTTGTTTGGAGTTAACATTGAGACCTCCTCCCTTTTGCTACAGAATGGGATGCCGAACCTAAGAAACATCAGCAACGATTCTTTGTCAACGCCATTTGCTACATCAAAATTTGGCAACACTACAGGAAATGATTTTCCACTAAGTTCAGACATGACAACTTCAAGTTGTGCGGATGAATCTGGTTTCTTACAGTCGTCTGAAAATATTGACCAAGCACATACTTCCATTAGAACCTTTGTTAAGGTTCACAAGTCGGGGTCCTTCGGGAGATCACTGGATATTTCCAAGTTTAGCAGCTATGATGAGCTGCGTAGTGAGCTGGGTCGAATGTTTGGCCTTGAAGGCCAACTGGAGGACCCTCAGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGGGAGAATGATGTTCTTCTCCTTGGTGATGACCCATGGCAGGAATTTGTGAACAATGTATGGTATATCAAGATATTGTCCCCACTTGAGGTTCAACAACTAGGCAGAGAGGGCCTTGCTCCTGCAACCAATCAAAAGCTCTCTACCATTGTCAATGCCTCTGATGATTATGTGACTCGACATGACTTCAGAAATTCTAGCAATGGAATTGCTTCTATGGGCTCTTTTGACTACTAG 2730 0.4454 MRPSSSGFNQQAQEGETKCLNSELWHACAGPLVSLPPVGTRVVYFPQGHSEQVAASTNKEVDAHIPNYPNLSPQLICQLHNVTMHVRICLNGDLLVIFHVTSVICPFFFDSQADVETDEVYAQMTLQPLSPQEQKDVYLLPAELGSPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSLQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFIWNDKNQLLLGIRHANRHQMIMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVISLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGEKQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPSGMPPLQGLKDGDMGLNSPLMWLQSGLGDQGIPTLNFQGLGVTPWMRPRLDTSLSGLQPELYQAMATAALQEMRTIDPSKCSPQSLLQFQQSIPNAPISVIQRQMLQHSQSQNSLLQSLQENQLSSQPQLLQHQPQRYHPFNDHQQHQQQSPSQQLQHSQQIHNVAAQHQLPTTMSSLSNFSSAYHSQSPSLQTITSHSQQLGLSESCRNLISTTEVSPIHGLLGALTQDGASHLFNMSGSNPVISSAASQCVLPQVDHIGAPQSNVSELAGLPPFPGKEFPTSYGATDPQNNLLFGVNIETSSLLLQNGMPNLRNISNDSLSTPFATSKFGNTTGNDFPLSSDMTTSSCADESGFLQSSENIDQAHTSIRTFVKVHKSGSFGRSLDISKFSSYDELRSELGRMFGLEGQLEDPQRSGWQLVFVDRENDVLLLGDDPWQEFVNNVWYIKILSPLEVQQLGREGLAPATNQKLSTIVNASDDYVTRHDFRNSSNGIASMGSFDY* 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00466 909 SMART B3_2 155 257 IPR003340 GO:0003677
Pte5g00466 909 Pfam Auxin response factor 281 364 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pte5g00466 909 Pfam B3 DNA binding domain 155 256 IPR003340 GO:0003677
Pte5g00466 909 SUPERFAMILY DNA-binding pseudobarrel domain 140 284 IPR015300 -
Pte5g00466 909 FunFam Auxin response factor 772 866 - -
Pte5g00466 909 ProSiteProfiles PB1 domain profile. 777 861 IPR000270 GO:0005515
Pte5g00466 909 FunFam Auxin response factor 319 391 - -
Pte5g00466 909 ProSiteProfiles B3 DNA-binding domain profile. 155 257 IPR003340 GO:0003677
Pte5g00466 909 FunFam Auxin response factor 153 257 - -
Pte5g00466 909 Gene3D - 153 256 IPR015300 -
Pte5g00466 909 MobiDBLite consensus disorder prediction 548 568 - -
Pte5g00466 909 CDD B3_DNA 154 247 IPR003340 GO:0003677
Pte5g00466 909 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 866 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pte5g00466 909 SUPERFAMILY CAD & PB1 domains 775 851 - -
Pte5g00466 909 Pfam AUX/IAA family 767 862 IPR033389 -
Pte5g00466 909 Gene3D - 772 866 - -
Pte5g00466 909 Gene3D - 319 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00466 Pte-Chr5 4649098 4657486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00466 1 498 B3 DNA Binding Superfamily AT1G30330 80.517 0.0 800
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pte5g00466 AUX_IAA 2.6e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00466 - - zju:107416662 1354.35