Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00449 ATGGATTCGGGTTCCGACAGCACCGCTGCTTCTGCCACTCCTCCGTCTGCTGATACCAAGCCGCCGGCGAAGGAGACCAAAAGCTGGGCTGATGTAGCTGAAGAAGAAAGCTCTAGAGACGATGAATCATCAACAAATGCTCCTACTTCAAGTTCATCTATTGAAACGCCCAACGTCGAAGGGTTAACCATTGACGAGAATAAGGAGCCGGTCAACAAGTTTCTTGATGAACCTGAGGACTCTAACATTAAAGCAGTTACATTAGGGGATACGCCTTATACTTCGGCGAGTACATTTGAAGATTTGAAGTTGTCTGAAGAACTAATAAAGGGCTTATATGTGGAGATGAAATTCCAGAAGCCTAGCAAAATTCAATCTATAAGTTTGCCTATGATTTTGACTCCACCTTATAAAGATTTGATTGCTCAAGCCCATAATGGTTCTGGAAAAACAACCTGTTTTGTACTTGGGATGCTGAGTCGTGTTGATCCTAAGCTGCAAGCACCACAAGCACTCTGTATTTGTCCCACCAGAGAATTGGCTATTCAGAACGTAGACGTTCTTCGGAAGATGGGAAAATATACAGGAATTAGTTCAGAATGTGCCGTACCAACTGATAGTAGGGATACTCTTCCTATACAGAAGAGGGCACCTATTATGGCTCAAGTAGTGATCGGCACTCCAGGAACCATAAAGAGATGGATGCAATACAAGAAATTGGGAGTCAGCCATTTGAAGATCCTTGTATTTGATGAGGCTGATCAAATGCTGGCAGAGGATGGTTTTCAAGATGATTCCTTGAGAATAATGAAAGACATCCGAAAAATCAGTCCTGATTGCCAGGTGCTTTTGTTTTCTGCTACATTCAATGACACTGTCAAGAATTTTGTTTCAAGGGTTGTTAGAGATCACAACCAATTATTTGTTAAGAGGGAGGAGCTTTCCTTGGATGCAGTAAAGCAATACAAGGTGAACTGTCCTGATGAACTCTCCAAGCTGGAGGTGGTCAAAGATTATATCTTTGAATTTGGAGAGAATGTGGGACAAACTATCATATTTGTGCGTACGAGGAATAGTGCACAAATGTTGCACAAGTCACTCAAGGATATGGGTTATGAGGTCACTGCTATTCAAGGGGCTCTTGATCATGATCAGAGAGATAAAATTGTCAGAGAGTTCAAAGATGGTCTCACTCAAGTACTTATTTCCACAGATGTACTTGCTCGTGGCTTTGATCAACAGCAGGTCAATTTGGTCATAAATTATGACCTTCCAGTGAAGCATACCACTGAGTATAGTCGTGGGTTTGAGCCTGATTATGAGGTCTATCTGCACAGAGTTGGCAGAGCAGGTCGTTTTGGCCGCAAGGGTGCTGTGTTTAATCTGATCTGTGGCGAGAGAGATGAAAAACTAATGGCAAAGATTCAACAGCACTTCGGCACCAACATCACTGAGGTCCGTGAGAAAAACCTAGAAGAGTTCAAAGGTGCTCTCAAATCTGCTGGTTTACTCTGA 1515 0.4277 MDSGSDSTAASATPPSADTKPPAKETKSWADVAEEESSRDDESSTNAPTSSSSIETPNVEGLTIDENKEPVNKFLDEPEDSNIKAVTLGDTPYTSASTFEDLKLSEELIKGLYVEMKFQKPSKIQSISLPMILTPPYKDLIAQAHNGSGKTTCFVLGMLSRVDPKLQAPQALCICPTRELAIQNVDVLRKMGKYTGISSECAVPTDSRDTLPIQKRAPIMAQVVIGTPGTIKRWMQYKKLGVSHLKILVFDEADQMLAEDGFQDDSLRIMKDIRKISPDCQVLLFSATFNDTVKNFVSRVVRDHNQLFVKREELSLDAVKQYKVNCPDELSKLEVVKDYIFEFGENVGQTIIFVRTRNSAQMLHKSLKDMGYEVTAIQGALDHDQRDKIVREFKDGLTQVLISTDVLARGFDQQQVNLVINYDLPVKHTTEYSRGFEPDYEVYLHRVGRAGRFGRKGAVFNLICGERDEKLMAKIQQHFGTNITEVREKNLEEFKGALKSAGLL* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00449 504 SMART ultradead3 117 322 IPR014001 -
Pte5g00449 504 MobiDBLite consensus disorder prediction 24 42 - -
Pte5g00449 504 MobiDBLite consensus disorder prediction 1 15 - -
Pte5g00449 504 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 131 307 IPR014001 -
Pte5g00449 504 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 335 495 IPR001650 -
Pte5g00449 504 Pfam DEAD/DEAH box helicase 123 295 IPR011545 GO:0003676|GO:0005524
Pte5g00449 504 SMART helicmild6 361 454 IPR001650 -
Pte5g00449 504 MobiDBLite consensus disorder prediction 43 60 - -
Pte5g00449 504 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 97 126 IPR014014 GO:0003724
Pte5g00449 504 CDD DEADc_DDX19_DDX25 104 307 - -
Pte5g00449 504 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 47 472 - -
Pte5g00449 504 Pfam Helicase conserved C-terminal domain 332 454 IPR001650 -
Pte5g00449 504 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 475 IPR027417 -
Pte5g00449 504 Gene3D - 316 498 IPR027417 -
Pte5g00449 504 Gene3D - 79 314 IPR027417 -
Pte5g00449 504 CDD SF2_C_DEAD 319 463 - -
Pte5g00449 504 MobiDBLite consensus disorder prediction 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00449 Pte-Chr5 4438070 4443271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00449 90 486 Eukaryotic Initiation Factors Gene Family AT1G72730 37.653 2.27e-73 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00449 K18655 - qsa:O6P43_010208 755.747