Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00444 ATGATGGAGAGTCGTTTGGAGAATACAACATCAGGAGCTAATGAAGGTTTGCCTGATATTTCAATCGTTGGTATCACCGACAATGGGAGAAGTAGTGCATGGGGAATACCACATGGCTCTAGAGCATTTCATGCCTCAAGTGACGCTAGCCTTTTCTCCAGCTCGCTGCCAGTCCTTCCACATGAAAAATTGAAATTTACTGATTCTGAGGATCTGGTTCAATCTTTTGATGATAACTTGCCACTTCCCGATAAGCTTCACAATGAAGATGAGGATTACGACCAACTCCTGGAATCTGAAATGAATGCAATTGGTAACATGCTTCCAGATGATGAAGAAGAGCTATTGGCTGGGATCATCGATGATTTTGACCTTACAAGGCTGCCAAGCCAGCTTGAGGATTTGGATGACAATGATCTATTTGGCAGCGGGGGTGGTCTAGAAATGGATTATGATCCCCAAGAAAGCCTTGGCGTTGCATTCTCAAGGGTAAGCTTATCTGATGGAGTTTCTCTAAATGGTACTGGTCACTATGCACTTTCAAATGGTGTTGCACCTATTGCCGGGGAACATCCTTATGGGGAGCATCCATCGAGGACATTATTTGTTCGAAACATCAATAGTAATGTCGAAGACTCTGAATTAAGATCACTCTTTGAGCAATATGGGGATATCAGGACTTTGTACACTCTATGCAAGCACAGGGGCTTTGTAATGATATCTTATTATGACATTCGAGCTGCTCGAACTGCAATGAGAGCATTACAAAACAAGCCCTTAAGAAGAAGGAGGCTCGACATTCATTTTTCCATTCCTAAGGATAATCCCTCAGAAAAGGATATCAACCAAGGCACTCTTGTGGTATTTAACTTGGACCCTTCAGTGTCAAATGATGACCTCCTACAAATATTTGGAGCATATGGGGAGATTAAGGAAATCAGGGAAACGCCACACAAGAGGCACCACAAGTTCATAGAATTTTATGATGTCAGGGCAGCAGAGGCAGCTTTGAAAGCATTAAATAGGAGCGATATTGCTGGAAAACGCATAAAGCTTGAACCAAGCCGGCCTGGTGGAACGCGTAGGAATTTAATGCATCAATTCGGTCATGAGCTGGACCACGATGAGCTACGGAGTTTCAGACATCATGTGGGTTCACCTTTGACAAACTCTCCTCCTGGTAACTGGACACGTTACGGCAGTCCTGTGGAGCATAGTCCATTTCGCTCATTTAGCAATTCCCCAGGTTTTGGTGGTGCAAGTCCAACAAATAGCAATCTTCTGCCTGGATTAGCATCGATTCTGCCTCATCACGTGTCTAACTCAGCAAAGATTTCACCTATTGGTAAAGATCAAGGAAGGATAAATCATGGACACCAATTGTTCCCTAAATCTTTACCAACTCAGGAGACTGGTTTTCAGCATTCCAGTTCTTATCCTGATCAGAAATCAAATTCTAGTACAAGACTTTTATCTGGTTTTGGTGAACCAAGTTCTGGTTCATCAAGTATTGGAACACTTACTGGCCCCCAATTTCTCTGGGGAAGTCCAACCCCTTACTCGGAGCGGTCAAGTTCATCAGTCTGGTCAACATCTTCTGGTGGAAACCCATTCACGTCAACAGGCCAAAGTCAAGGTTTTCCATACCTTGGTCGACGTTCCTCTTTTCTTGGCTCACAGTTTTATCATCATGTAGGATCTGCTCCATCTGGTGTAGCTCTTGATAGGAATTTTAGCTGTTTCCCTGAATCACCTGACACATCTTACACAAGATCCGTTGCATTTGGGGCATTGAGCCATGACGATGAAAATTTAATGATTAATATGGGAAGTACTCATGCTGCTATGGGAGCTGGTGTTGCACATCGGGGAAATATACATGAAAATAGTTCATCCAATTTCTCAATGTTGTCACTGCCTAAGCATGGGTCTTTGTTTCTGGGAAATGGGTTGTATTCTGGGCTTGGAGGAACAATCAATGATGGATTGATCGAGCGCGGCTGGAATCGAAGACCTGAGATCAATGTGAACCAGATTGATATCAAGAAACAATATCAACTTGATTTAGATAAAATCATCAAGGGGGAAGATAATAGGACTACTTTAATGATTAAAAACATTCCTAATAAGTACACCTCAAAGATGCTGTTGGCTTCCATTGATGAGAATCATAGGGGTACTTATGACTTTCTCTACCTGCCGATTGATTTTAAGAACAAGTGCAATGTTGGTTATGCTTTCATCAACATGGTGTCTCCTTCACACATCATATCCTTTTACGAGGCATTTAATGGGAAAAGGTGGGAGAAGTTTAACAGTGAAAAAGTTGCTTCCCTGGCCTATGCTAGAATCCAGGGAAAGGCTTCCCTTGTTGCACACTTTCAGAATTCTAGCCTGATGAATGAAGATAAACGATGCCGGCCCATTCTCTTCCATTCAGAAGGAGAAGAAAATGGCGATGAGGAATCTCTCCTTTCTAGCAATTTAAACATATGCATTCGTCAACCAGATGGATCATACTCAGGTGACTTGTTGGACAGTCCAAAGGGTGATTTTGATGAGAAGCTAGACAACATTTAA 2580 0.4252 MMESRLENTTSGANEGLPDISIVGITDNGRSSAWGIPHGSRAFHASSDASLFSSSLPVLPHEKLKFTDSEDLVQSFDDNLPLPDKLHNEDEDYDQLLESEMNAIGNMLPDDEEELLAGIIDDFDLTRLPSQLEDLDDNDLFGSGGGLEMDYDPQESLGVAFSRVSLSDGVSLNGTGHYALSNGVAPIAGEHPYGEHPSRTLFVRNINSNVEDSELRSLFEQYGDIRTLYTLCKHRGFVMISYYDIRAARTAMRALQNKPLRRRRLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLLQIFGAYGEIKEIRETPHKRHHKFIEFYDVRAAEAALKALNRSDIAGKRIKLEPSRPGGTRRNLMHQFGHELDHDELRSFRHHVGSPLTNSPPGNWTRYGSPVEHSPFRSFSNSPGFGGASPTNSNLLPGLASILPHHVSNSAKISPIGKDQGRINHGHQLFPKSLPTQETGFQHSSSYPDQKSNSSTRLLSGFGEPSSGSSSIGTLTGPQFLWGSPTPYSERSSSSVWSTSSGGNPFTSTGQSQGFPYLGRRSSFLGSQFYHHVGSAPSGVALDRNFSCFPESPDTSYTRSVAFGALSHDDENLMINMGSTHAAMGAGVAHRGNIHENSSSNFSMLSLPKHGSLFLGNGLYSGLGGTINDGLIERGWNRRPEINVNQIDIKKQYQLDLDKIIKGEDNRTTLMIKNIPNKYTSKMLLASIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKRWEKFNSEKVASLAYARIQGKASLVAHFQNSSLMNEDKRCRPILFHSEGEENGDEESLLSSNLNICIRQPDGSYSGDLLDSPKGDFDEKLDNI* 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00444 859 CDD RRM1_MEI2_like 198 274 IPR034453 -
Pte5g00444 859 Gene3D - 283 375 IPR012677 -
Pte5g00444 859 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 272 IPR000504 GO:0003723
Pte5g00444 859 MobiDBLite consensus disorder prediction 1 20 - -
Pte5g00444 859 CDD RRM3_MEI2_like 702 787 IPR034454 -
Pte5g00444 859 SUPERFAMILY RNA-binding domain, RBD 701 786 IPR035979 GO:0003676
Pte5g00444 859 PANTHER RNA RECOGNITION MOTIF-CONTAINING 49 816 - -
Pte5g00444 859 MobiDBLite consensus disorder prediction 443 508 - -
Pte5g00444 859 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 284 357 IPR000504 GO:0003723
Pte5g00444 859 FunFam Protein MEI2-like 1 283 378 - -
Pte5g00444 859 MobiDBLite consensus disorder prediction 524 544 - -
Pte5g00444 859 CDD RRM2_MEI2_like 283 353 - -
Pte5g00444 859 Pfam RNA recognition motif 2 699 795 IPR007201 -
Pte5g00444 859 SMART rrm1_1 285 353 IPR000504 GO:0003723
Pte5g00444 859 SMART rrm1_1 200 268 IPR000504 GO:0003723
Pte5g00444 859 SMART rrm1_1 701 777 IPR000504 GO:0003723
Pte5g00444 859 MobiDBLite consensus disorder prediction 1 16 - -
Pte5g00444 859 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 286 351 IPR000504 GO:0003723
Pte5g00444 859 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 265 IPR000504 GO:0003723
Pte5g00444 859 FunFam MEI2-like protein 5 isoform 2 188 282 - -
Pte5g00444 859 Gene3D - 189 282 IPR012677 -
Pte5g00444 859 MobiDBLite consensus disorder prediction 462 508 - -
Pte5g00444 859 SUPERFAMILY RNA-binding domain, RBD 196 360 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00444 Pte-Chr5 4402309 4411927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00444 194 392 Eukaryotic Initiation Factors Gene Family AT1G71770 24.664 7.79e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00444 - - gmx:100812324 1214.91