Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00434 ATGCCCACCATGGAGGATGCAAATTCTAATGTTTCTAAAGCTGACGAACTCAAGAACAAAGCCAATGAAGCATTCAATGCACGTAAATATGCTCAAGCCGTTGATTTATATACGCAAGCAATTGAACTAAACAGCCAAAATGCTGTATATTTGGCTAACCGTGCATTTGCACACATTAAGCTGGAGGAATATGGCAGTGCCATACAGGATGCAACAAAGGCAATTGAAATTGATCCTAAATATTCTAAGGGCTATTACAGGCGTGGTGCTGCTTACCTTGCCATGGGGAAATTCAAAGAAGCGCTAAAGGATTTTCAACAGGTGAAAAGAATAAGCCCGAATGATCCAGATGCAACTAAGAAGTTAAAGGAGTGTGAGAAAGCAGTCATGAAGCTTAAATTTGAAGAGGCAATTGCTGCACCGGAGGCTGCAAGGCGTTCCGTGGCTGATTCTATTGATTTCCATACTATAGAGGTGGAGCCACAATATTCTGGTGCGAGAATAGAGGGTGATATTGTTACATTGGATTTTGTGAAGAAAATGATGGAAGATTTCAAGAACCAGAAATATTTACATAAACGATATGCATTTCAGATTGTACTCCAAACAAGAGAGATGTTGAGAGCGTTGCCTTCTCTGGTTGATATAAATGTTCCAGACGGTAAACATTTCACTGTCTGTGGTGATGTGCATGGTCAGTTCTATGATCTCTTACATATTTTTGAGCTTAATGGCCTTCCTTCAGAAGAGAATCCATACCTCTTCAATGGTGACTTTGTCGACAGGGGGTCTTTCTCGCTGGAAGTCATCCTCACATTGTTTGCATTGAAGTGCATGTCTCCCTCAGCCATATATCTAGCCAGAGGAAATCATGAGAGCAAGAGTATGAACAAGATATATGGTTTTGAGGGCGAAGTTCGTTCCAAGTTGAACGAAACATTTGTGGAACTCTTTGCGGAAACATTCTGCTGTTTACCTTTGGCGCATGTAATAAATGAGAAAGTGTTTGTGGTCCATGGAGGTCTTTTTAGTGTTGATGGTGTCAAACTATCCGATATAAGAGCAATCAATCGATTTTGTGAGCCCCCAGAAGAAGGTTTAATGTGTGAATTGCTGTGGAGTGATCCGCAACCTTTCCCTGGAAGGGGCCCTAGCAAGCGGGGAGTGGGCCTTGCATTTGGTGCAGATGTGACTAAGAAGTTTTTGCAAGAAAACAACTTAGATCTAGTGGTGCGATCCCATGAAGTGAAGGATGAGGGTTATGAGATTGAGCACGATGGTAAACTCATTACTGTATTCTCTGCTCCGAATTACTGTGACCAGGTAACTAAACACTGTCCATTGGCACTTCACATCCCTAATAACCATTCTCAATTCCTTGATACTTTCCTCACACATACAGGATCCTCTTACAAATATCTACACTTGCAAAAAAATATTCATATTTTGTACAAGTTGGGTTTCAGGGCTGAAGTTAGGCTTTCTTGTTGA 1491 0.4131 MPTMEDANSNVSKADELKNKANEAFNARKYAQAVDLYTQAIELNSQNAVYLANRAFAHIKLEEYGSAIQDATKAIEIDPKYSKGYYRRGAAYLAMGKFKEALKDFQQVKRISPNDPDATKKLKECEKAVMKLKFEEAIAAPEAARRSVADSIDFHTIEVEPQYSGARIEGDIVTLDFVKKMMEDFKNQKYLHKRYAFQIVLQTREMLRALPSLVDINVPDGKHFTVCGDVHGQFYDLLHIFELNGLPSEENPYLFNGDFVDRGSFSLEVILTLFALKCMSPSAIYLARGNHESKSMNKIYGFEGEVRSKLNETFVELFAETFCCLPLAHVINEKVFVVHGGLFSVDGVKLSDIRAINRFCEPPEEGLMCELLWSDPQPFPGRGPSKRGVGLAFGADVTKKFLQENNLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQVTKHCPLALHIPNNHSQFLDTFLTHTGSSYKYLHLQKNIHILYKLGFRAEVRLSC* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00434 496 SUPERFAMILY Metallo-dependent phosphatases 171 446 IPR029052 -
Pte5g00434 496 Gene3D - 137 472 IPR029052 -
Pte5g00434 496 Pfam Tetratricopeptide repeat 50 80 IPR019734 GO:0005515
Pte5g00434 496 ProSiteProfiles TPR repeat region circular profile. 82 115 - -
Pte5g00434 496 SMART tpr_5 82 115 IPR019734 GO:0005515
Pte5g00434 496 SMART tpr_5 14 47 IPR019734 GO:0005515
Pte5g00434 496 SMART tpr_5 48 81 IPR019734 GO:0005515
Pte5g00434 496 Pfam Tetratricopeptide repeat 83 115 IPR001440 GO:0005515
Pte5g00434 496 SUPERFAMILY TPR-like 10 139 IPR011990 GO:0005515
Pte5g00434 496 Coils Coil 4 24 - -
Pte5g00434 496 ProSiteProfiles TPR repeat profile. 82 115 IPR019734 GO:0005515
Pte5g00434 496 FunFam Serine/threonine-protein phosphatase 5 4 141 - -
Pte5g00434 496 Pfam PPP5 TPR repeat region 122 215 IPR013235 -
Pte5g00434 496 Gene3D Tetratricopeptide repeat domain 2 132 IPR011990 GO:0005515
Pte5g00434 496 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 46 442 - -
Pte5g00434 496 CDD MPP_PP5_C 163 441 IPR041753 -
Pte5g00434 496 PRINTS Serine/threonine phosphatase family signature 428 444 IPR006186 GO:0016787
Pte5g00434 496 PRINTS Serine/threonine phosphatase family signature 320 346 IPR006186 GO:0016787
Pte5g00434 496 PRINTS Serine/threonine phosphatase family signature 223 250 IPR006186 GO:0016787
Pte5g00434 496 PRINTS Serine/threonine phosphatase family signature 253 280 IPR006186 GO:0016787
Pte5g00434 496 PRINTS Serine/threonine phosphatase family signature 350 377 IPR006186 GO:0016787
Pte5g00434 496 PRINTS Serine/threonine phosphatase family signature 406 426 IPR006186 GO:0016787
Pte5g00434 496 PRINTS Serine/threonine phosphatase family signature 286 310 IPR006186 GO:0016787
Pte5g00434 496 PIRSF PPPtase_5 1 478 - -
Pte5g00434 496 SMART pp2a_7 191 457 IPR006186 GO:0016787
Pte5g00434 496 ProSiteProfiles TPR repeat profile. 14 47 IPR019734 GO:0005515
Pte5g00434 496 ProSiteProfiles TPR repeat profile. 48 81 IPR019734 GO:0005515
Pte5g00434 496 FunFam Serine/threonine-protein phosphatase 5 142 476 - -
Pte5g00434 496 Pfam Calcineurin-like phosphoesterase 223 417 IPR004843 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00434 Pte-Chr5 4296465 4305284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00434 157 407 Calmodulin-binding Proteins AT5G63870 31.757 3.65e-39 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00434 K04460 - aew:130790041 792.727