Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00418 ATGCATCTTAGTTATTCAGATTTTTTTCTCTGTGTGTCGCTTTTATCAAGGAGTTTACCTCTATTTCTAGTAGAGCATGTTGGCTCTTCTAGATTTTCCTGTGTAAGGAATAAATTTTCATGTTTGTTGGTTCGGTTAGTCGTAGGGATGGGTGAAGAGGTGAAAGCTGTTGTCCCAGAGTCTGTGTTAAAGAAGCGAAAGAGGGAAGAGGAATGGGCTTTAGCCAAAAAGCAGGAGGTTCAGGATGCCAAGAAGAAGAATTCTGAGAGTCGCAAGATCATTTTTAAAAGAGCGAAGCAGTATGCTAAAGAGTATGAGCAGCAGGAAAGAGAACTTATCAGATTGAAGCGCGAGGCTAAATTGAAAGGAGGGTTTTACGTTGACCCTGAAGCTAAGCTCTTATTTATCGTCCGTATTCGTGGTATCAATGCCATTGATCCAAAGACAAAGAAAATCTTGCAACTTTTGCGATTGAGGCAGATTTTCAATGGTGTTTTTCTGAAAGTGAACAAAGCCACAATGAATATGCTTCACAGGGTTGAGCCATACGTGACTTATGGATACCCCAACCTGAAGAGCGTTAGAGAACTGATTTACAAGAGAGGCTTTGGCAAGCTAGACAAGCAACGTATTGCCTTGACTGACAACTCCATTATTGAGAAGGCATGTATTTTGTATTGTATTTGGTTATATCATATATTTGACTCCGGCCTTGGCAAGTATGGCATTATCTGTGTGGAAGATCTTATTCATGAGATCATGACCGTTGGGCCTCACTTCAAGGAGGCCAACAACTTCCTGTGGCCTTTTAAGCTCAAGGCACCATTGGGTGGTCTCAAGAAGAAGAGGAATCACTACGTTGAAGGTGGAGATGCTGGAAACCGTGAGAATTATATCAATGAACTCATCAGAAGAATGAATTAG 924 0.4123 MHLSYSDFFLCVSLLSRSLPLFLVEHVGSSRFSCVRNKFSCLLVRLVVGMGEEVKAVVPESVLKKRKREEEWALAKKQEVQDAKKKNSESRKIIFKRAKQYAKEYEQQERELIRLKREAKLKGGFYVDPEAKLLFIVRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGFGKLDKQRIALTDNSIIEKACILYCIWLYHIFDSGLGKYGIICVEDLIHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00418 307 Pfam Ribosomal L30 N-terminal domain 58 129 IPR012988 -
Pte5g00418 307 FunFam 60S ribosomal protein L7 133 252 - -
Pte5g00418 307 ProSitePatterns Ribosomal protein L30 signature. 152 184 IPR018038 -
Pte5g00418 307 Gene3D - 238 307 IPR036919 -
Pte5g00418 307 Gene3D - 133 223 IPR036919 -
Pte5g00418 307 CDD Ribosomal_L7_archeal_euk 133 307 IPR035808 -
Pte5g00418 307 Pfam Ribosomal protein L30p/L7e 134 184 IPR016082 -
Pte5g00418 307 NCBIfam 60S ribosomal protein uL30 59 307 IPR005998 GO:0000463|GO:0003735|GO:0022625
Pte5g00418 307 FunFam 60S ribosomal protein L7 253 307 - -
Pte5g00418 307 Coils Coil 98 122 - -
Pte5g00418 307 SUPERFAMILY Ribosomal protein L30p/L7e 133 307 IPR036919 -
Pte5g00418 307 PANTHER 60S RIBOSOMAL PROTEIN L7 56 307 IPR039699 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00418 Pte-Chr5 4112504 4114041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00418 53 308 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 82.812 1.12e-155 433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00418 K02937 - zju:107428176 428.328