Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00416 ATGTGCAAATTGCTTCAATCCCTTCTCAATCGTTTAGTAATGGCAATTTTCGGAAGTAAACACGTTTTCTCTTCGATGGTTATACATACCATTTGTGATGCTATAATTCAAGCATTTACAGAAGTAATGAAAAGAATTCTTCTAGTTGCTGTCACCTGTATTCTTGCAATAGGGGGTTCTGTTTTAGGAACAACTTTGGGGGCTATAAGGGGTCAGTTCACAGAGGCTGGGTTTCTTGATGGTGCTGGGAAAGGAGCTGTTACAGGGGCCATTGCAGCTATTCAGTTGCTTGAGCTGGATTTCAGTGATGATGATGAATCATTTCCCAAGGTTGCCCTTTTAGGAAAATTAGTACTGGGTAAGACTTTCATGGAATGCATATATCTCACAGTAGCAAAAGCCTATGAGTGGAATATTGTAACAGAAACCACCTTTGAAGATATATCAGATGCTTATGACGCTTGTGGGGTAACAGGATTATCAGATAATTTGATTAAAAGCCTTCCCATCCATCATTTCAACTCATCCAACATGTCAAGATCATCTGTTGACTTGTGCTGCTCAATTTGCATACAGGACTTGAACGATGGAGACTTAACCAGAGTACTCCAAACATGTGGGCACTGTTTTCACCTGCATTGCATAGATGTCTGGTTAAGCCGACGAGGATCTTGTCCCTTGTGTAGAAGTGATATATTAACGAAACAAATGATTGGCTTGTAA 723 0.4011 MCKLLQSLLNRLVMAIFGSKHVFSSMVIHTICDAIIQAFTEVMKRILLVAVTCILAIGGSVLGTTLGAIRGQFTEAGFLDGAGKGAVTGAIAAIQLLELDFSDDDESFPKVALLGKLVLGKTFMECIYLTVAKAYEWNIVTETTFEDISDAYDACGVTGLSDNLIKSLPIHHFNSSNMSRSSVDLCCSICIQDLNDGDLTRVLQTCGHCFHLHCIDVWLSRRGSCPLCRSDILTKQMIGL* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00416 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 234 IPR013083 -
Pte5g00416 240 CDD RING-H2_PA-TM-RING 186 229 - -
Pte5g00416 240 ProSiteProfiles Zinc finger RING-type profile. 187 229 IPR001841 -
Pte5g00416 240 Pfam RING-H2 zinc finger domain 177 229 IPR024766 GO:0008270
Pte5g00416 240 SMART ring_2 187 228 IPR001841 -
Pte5g00416 240 SUPERFAMILY RING/U-box 186 235 - -
Pte5g00416 240 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 29 231 IPR044523 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00416 Pte-Chr5 4106688 4108345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00416 27 232 C3H Transcription Factor Family AT5G66070 32.093 1.64e-30 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00416 - K19041 qsa:O6P43_013721 226.483