Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00407 ATGCAAGGCACAATCACACCATCACCTTTGAGATTCCAGCTTTCTTGTTCTCCAAGCAATAATAATGCCGGAACAGGAGTGAATGAGGTAACAGCCGGAAACCAGTGGGAGCGCCTGCCAACATTGAAAGCTAACAGCTTTGTTGTTGGTCGGCCTTCCAAATTGGGTGATTGCAAAATGGATCCCAACAATGTTGCAGCGCAATTTGAAGGCGGGTACGCTGGAGAAACGAAAGCAGAGGGTGGCAACAATGGAGGTGATGGTGTCGACAATGTTGGGGGTGATGTGGTGACCTTGAAGAAAGGTCCATGGACTGCAGCGGAGGATGTTATTCTTATTGATTATGTGACCAAGCATGGTGAAGGCAACTGGAATGCCGTGAGGAAGACTACCGGTTTGGCTCGTTGTGGTAAGAGCTGCAGGCTCAGGTGGGCTAACCATTTGAGACCAAATTTGAAGAAAGGTGTTTTCTCTCCTGAAGAAGAAGAGCTAATCATCAAGCTTCATGCCCAGTTTGGCAACAAATGGGCTAAAATGGCTTCTCTGTTGCCAGGAAGAACAGACAATGAGATCAAAAACTACTGGAACACCAGAATCAAGCGTCGTCAACGCCAAGGTCTACCTCTATACTCACAAGAGCCTCGCCACGGTTATCAAAACTCACCTACAACACCAACTTCTCTGACAGCACCAACAACACCAACAGGTGCAGCGTTTCAGTTCCAAGCTCATAGTCATTTCCCTCTCTCACCAACTCCGCAGCCTCATTCTTCATTAACTTCACCACATCCAACAACATCCACCTACAATAGACTTCCTCTGTTCAATCTCGCCTCTGTCTCTTCGTCTTCTTCCACTCCTGCACGCTCCAGCTTCAGCTTTCAACGACCAACTCCTATATTGTCTCCCACACTAGGTTTCAAGCGGTTTCGTTCTTCTACAGGTAGCTATTCTCTTTCGCCAAGCTACTCTGCTTGTCAATTGGATCAACCTACAGCAACCCAAATGCAAAACTTTGGGGGATTTCAGTTGCCAACGACACTAAATACTTCAAGTTCGTCACCGATGCTAAAAACCCAATTCGATTCTGATAGAGTGGTTGCTTCGCCTACTTCAATTTTCCCAACGAAGTTGGAGCTCCCTTCAAACCAATTTCCTAAAGTCAAAGAGCAAGAGATCACCTTTGACAACAATTTCAACAATGGAACTTCGAGTTCTCAAACAAACCATGGTGAGATTTTTGGAGATCTTTGGTATGAAACGCAGGCACTGCCTTCAGTTCCTTACGATTTCAAGAAAGAAAATTCCTTGTTTGACGAGTACAGAGGCTTAGACGATTTGAGCTCCCTATATTGGCCTAATTCAAGTTCAGGAACGCATTCAGAACCAAGCTTCAACGAAGAAGCACCAGATATGTGCAAACTCATGCAGGGAGACCTGTCTAGGCTGCTTACAAGCATGCCCTCTTCCACGCAGCATGATACAGAATGGTTCGGCGATGATCAATTTTCAAACGGGCAGTCTTCATTTCTGACAACAGATTATCATCATAATACTTTTGGTCTTGACATGAGACCTTTGAATTCATTGGCTACCTTGCTCCCCGTTGCCTCTGGAAGTACACATAATGAAACCGCAGCGGCCTCCTACAATTGGGATAATTTGCCTGGACTGTGTTGA 1680 0.4571 MQGTITPSPLRFQLSCSPSNNNAGTGVNEVTAGNQWERLPTLKANSFVVGRPSKLGDCKMDPNNVAAQFEGGYAGETKAEGGNNGGDGVDNVGGDVVTLKKGPWTAAEDVILIDYVTKHGEGNWNAVRKTTGLARCGKSCRLRWANHLRPNLKKGVFSPEEEELIIKLHAQFGNKWAKMASLLPGRTDNEIKNYWNTRIKRRQRQGLPLYSQEPRHGYQNSPTTPTSLTAPTTPTGAAFQFQAHSHFPLSPTPQPHSSLTSPHPTTSTYNRLPLFNLASVSSSSSTPARSSFSFQRPTPILSPTLGFKRFRSSTGSYSLSPSYSACQLDQPTATQMQNFGGFQLPTTLNTSSSSPMLKTQFDSDRVVASPTSIFPTKLELPSNQFPKVKEQEITFDNNFNNGTSSSQTNHGEIFGDLWYETQALPSVPYDFKKENSLFDEYRGLDDLSSLYWPNSSSGTHSEPSFNEEAPDMCKLMQGDLSRLLTSMPSSTQHDTEWFGDDQFSNGQSSFLTTDYHHNTFGLDMRPLNSLATLLPVASGSTHNETAAASYNWDNLPGLC* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00407 559 MobiDBLite consensus disorder prediction 210 231 - -
Pte5g00407 559 MobiDBLite consensus disorder prediction 1 27 - -
Pte5g00407 559 CDD SANT 157 197 IPR001005 -
Pte5g00407 559 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 83 515 - -
Pte5g00407 559 SUPERFAMILY Homeodomain-like 99 195 IPR009057 -
Pte5g00407 559 FunFam Transcription factor GAMYB 156 202 - -
Pte5g00407 559 Pfam Myb-like DNA-binding domain 101 148 IPR001005 -
Pte5g00407 559 Pfam Myb-like DNA-binding domain 154 197 IPR001005 -
Pte5g00407 559 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 98 148 IPR017930 -
Pte5g00407 559 MobiDBLite consensus disorder prediction 214 231 - -
Pte5g00407 559 ProSiteProfiles Myb-like domain profile. 149 199 IPR001005 -
Pte5g00407 559 Gene3D - 156 221 - -
Pte5g00407 559 SMART sant 100 150 IPR001005 -
Pte5g00407 559 SMART sant 153 201 IPR001005 -
Pte5g00407 559 Gene3D - 100 153 - -
Pte5g00407 559 CDD SANT 103 148 IPR001005 -
Pte5g00407 559 FunFam MYB-related transcription factor 100 153 - -
Pte5g00407 559 ProSiteProfiles Myb-like domain profile. 96 148 IPR001005 -
Pte5g00407 559 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 149 203 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00407 Pte-Chr5 4049627 4053004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00407 85 560 MYB Transcription Factor Family AT4G26930 37.067 3.66e-64 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte5g00407 Myb_DNA-binding 4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00407 - - qsa:O6P43_021180 378.252