Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00392 ATGGCCAACAACCAACTAGCCCAGTCTTCCTCGTACCCACCTCAACCCCCAACAGCTGCTGCTCCTCCATTTCACCACCACCTCCAGCAGCAACAGCAACAGCTCCAGATGTTCTGGACCTACCAGCGTCAAGAAATTGAGCACGTCAATGATTTCAAGAACCACCAGCTTCCATTGGCCCGCATCAAGAAGATCATGAAGGCCGATGAGGACGTCCGCATGATATCTGCTGAAGCCCCCATTTTGTTTGCCAAGGCCTGCGAGCTGTTCATCCTTGAGCTAACCATTCGATCCTGGCTTCACGCTGAAGAGAACAAGCGGAGGACACTTCACAAGAACGACATAGCCGCCGCCATCACCAGGACTGAGATCTTCGATTTCCTCGTCGATATTGTCCCCAGGGACGAGATCAAAGACGAGGCTGCACTTGGCGCCATGGTCGGCGCCACTGCTAGCGGGGTCTCTTACTACTACCCGCCAATGGGACAACCCGCCGGCCCTCCCCCTCCTGGTATGATGATCGGTCGCCCCGCTGTGGACCCCACTTCCATGTACGCACAGCCTCCCTCTCAGGCTTGGCAGTCGGTTTGGCAGACCAACGCTGAGGAATGTAGCGTTGGTTCCTACCCCGGCGGAGGGAGCACCAGCCAGGGCAACCTTGATGGGCAGAGTTGA 675 0.5689 MANNQLAQSSSYPPQPPTAAAPPFHHHLQQQQQQLQMFWTYQRQEIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLHKNDIAAAITRTEIFDFLVDIVPRDEIKDEAALGAMVGATASGVSYYYPPMGQPAGPPPPGMMIGRPAVDPTSMYAQPPSQAWQSVWQTNAEECSVGSYPGGGSTSQGNLDGQS* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00392 224 MobiDBLite consensus disorder prediction 204 224 - -
Pte5g00392 224 Pfam Core histone H2A/H2B/H3/H4 28 119 IPR007125 GO:0003677
Pte5g00392 224 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 29 151 - -
Pte5g00392 224 Gene3D Histone, subunit A 24 134 IPR009072 GO:0046982
Pte5g00392 224 FunFam Nuclear transcription factor Y subunit gamma 25 134 - -
Pte5g00392 224 SUPERFAMILY Histone-fold 7 128 IPR009072 GO:0046982
Pte5g00392 224 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00392 Pte-Chr5 3974249 3977158 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00392 24 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 82.439 6.98e-106 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Pte5g00392 CBFD_NFYB_HMF 2.6e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00392 - - pcin:129320575 317.005