Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00385 ATGTATGGGTATATCGCTTTATGCTTATTAGACCAATATAACAGTGCACTGTGGAATGTTGAAAGCCTGAAACCTTCAACTACAGTAAACAATGGATGTGATAAGGATGAGAATTACCACATTATCTTTGCTTCACCAGTCATATTTGATATCGGGCGAGTCAATCGAATGCAAGAGAGTTCTGGTCGACTTGGACTTCAGTTCAACATGATATGGGTAGCGTTGTGTCTTCTAGCTCAAATATTGAGCTCAGTCATGGCTAAGAAAACAAGGTCCATAGAGCAGCCACTGTCTATGATTGCTATTGAGAAAGCCACCTTTAACCTCAATATTGTTGCATCTATTAAAGCATTGCCAGCACTTCTTGGCTTAGGGGGAGGCAATACTGAATGGGTGAATGTAGACATTGATTATCAACATCCCTCCAAGGAAGATTGGATTGCAGTCTTTTCACCGTCTAATCCCGATAAAGGTGTGGGAAATCTAGCAGTCATGTGGTTGATTTTGAAGTATTATCCGTTCTTGAATCTTTATTGGTTGATTTTGAATCTGTCTCTTCCAGTTCATCCTAAATTGGTAGCAGTTTCAAATTATATCATTTATGAATCCAAAAGCTCCCGTGTATCCTCGCCTTGCTCTGGGAAAATCTTGGAACGAAGTTCACCTGCAAGAACTGTTGGCTGGACTGACCCTGGATTCACACACACAAGTTTTCTTACCAACCTGTGGCCTAATATGGAAATCGTTTCAATATATCCTGTTCTTTCACCACCAAATCTGACACCAGCCCAATCAAATCGAGTTTGCAGTGCCCTTGCTCTTCTTCAGTGTGTAGCATCACATTCAGATACTAGGATGCTATTCCTCAATGCTCATATTCCTTTGTATCTTTACCCTTTCCTTAATACAACAAGCAAGTCAAGGCCATTTGAGTATTTGAGGCTTACCAGCTTAGGTGTAATTGGTGCACTGGTGAAGGTTGATGATACTGAAGTTATCAGTTTCCTGCTTTCGACTGAGATAATTCCTCTTTGCCTTCGTACAATGGAAATGGGCAGTGAATTGTCGAAAACGGTTGCGACATTTATAGTTCAGAAGATTCTATTGGATGATGTAGGCTTGGACTACATCTGTGCAACTGCTGAACGCTTCTTTGCAGTTGGTCGAGTTTTGGCAAACATGGTTACAACTCTTGCTGAGGCACCTTCTCCTCGTCTTCTGAAACATATTATCCGTTGCTATCTGCGTCTCTCTGATAATGGAAGGGCTTGTGATGCATTAAGGAGTTGCCTTCCAGATATTCTTCGAGATGCTACTTTCAGCAGTTGCTTGCATGAAGATCCAACAACAAGGAGGTGGCTGCAGCAATTGCTACTCAATGTTGGAGGAGTGAGTAGGGTTCCAGGATTACAGGCTGGATTTGATCATATGTTGGTGAATTAA 1443 0.4158 MYGYIALCLLDQYNSALWNVESLKPSTTVNNGCDKDENYHIIFASPVIFDIGRVNRMQESSGRLGLQFNMIWVALCLLAQILSSVMAKKTRSIEQPLSMIAIEKATFNLNIVASIKALPALLGLGGGNTEWVNVDIDYQHPSKEDWIAVFSPSNPDKGVGNLAVMWLILKYYPFLNLYWLILNLSLPVHPKLVAVSNYIIYESKSSRVSSPCSGKILERSSPARTVGWTDPGFTHTSFLTNLWPNMEIVSIYPVLSPPNLTPAQSNRVCSALALLQCVASHSDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICATAERFFAVGRVLANMVTTLAEAPSPRLLKHIIRCYLRLSDNGRACDALRSCLPDILRDATFSSCLHEDPTTRRWLQQLLLNVGGVSRVPGLQAGFDHMLVN* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00385 480 Pfam Cell differentiation family, Rcd1-like 247 461 - -
Pte5g00385 480 Pfam Fn3-like domain from Purple Acid Phosphatase 115 157 IPR040974 -
Pte5g00385 480 Gene3D - 217 464 IPR011989 -
Pte5g00385 480 PANTHER UNCHARACTERIZED 246 463 IPR007216 GO:0006402|GO:0030014
Pte5g00385 480 FunFam Cell differentiation family, Rcd1-like containing protein 236 462 - -
Pte5g00385 480 SUPERFAMILY ARM repeat 269 435 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00385 Pte-Chr5 3915467 3926158 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Rcd1-like Pte5g00385 Rcd1 5.8e-107 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00385 K12606 - pop:7470819 425.631