Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00376 ATGACATACACTATTTACTACATTGAGAAATGTGTGTACGACAACTCACTCACATACACGCATACACACACCAACACTCAAGAGTCTCAGACCGTTTCTTCTCCTTTCCATCGTCTTCGTCTCCTCGGGCTCTCTGTTCTCCGTTCTCATTTCTCTCCTTTCATTGTCTCTCTCGCAGGTCTACTCCTAGTCGAAGTTGCTAAACTTCTCTCAACTTCTGGTTTGGTGGGCCTCCCCGAGTATCAGTGTATGCTATTTTGCTGGATTGGTGGGAGCTTAGGTGTCGTTGGTAAGGTTGCGTTTTGGGGTTTATGGTTTTCTATGGGGAGTATGAGTGAACCCGATAGAAAGCGGCGTCACTTGAGCTCCTTGTCACCTACTGCAGCCGCTGCCGCTGCTAAAAAGCAACCTTTTTCACCTATCTCCGAAGACAAGAAGCTTGATATTACCATTCTTCAGTTTCAGAATCAAAAGCTTTTACAGAAATTAGAGACCCAAAAGATAGAATACAAATCTCTAGAGGATAAACTTCTTCATTTGAAAAGAAAACAGGAGCCCTATGACTCTACATTAGCAGTTGTTAAGAAGAGTTGGGAACAGCTCATTAAAGAATTGGAATTGTATACTATTCAGTCAAAAGAGGCAAGCAATAAAGTGTATGCCAAGAGAAAGTCGGACACAAAAGGAACTATGTCCAGTGTCGAGGATGTTTTTCTAAGTCGACTTGTGGAAACTGGTGCAACCGAAAGCTCCTCCACAATTAATGTGGATACGAAAAAGGAAGCAGTCAGAGAAATGAAATATGAAAAGGCAACAAACATTCTACAAAATATAGTGGCAGATATAAACAACATTTGGTTTTTGAAGGATGAGTTGCAGGATATGGTATTAAAAGATGTCCCAGAAGATGGTTTCCACCTGCAGTCGACTACCAATGAAGTCAAGAACTTGAGATTGGCATTAGGTGAACTTCATTTGAAGCATAAGTGCTTGGCAAGGGAATTGCAATGTCACCGAGATATTGATGTGAAGAAGAATGCTGAATTAAAAAGGTTAAGGGGGGATTTGGAACGCAAAGTTGCAGAACTAGAGGAAAACAATAGGAAAATTGCATCCCTCAAATTACCCAAGGATGCAGTAAAAGGGACTAGTTTCCCTTTCATAAACCTAGGAGGCAAGGACTCAGCTGGTGATAAGGTCAAAGACAAGCAAAAGGATATGCAAGATATGGAGTCTTCTTTGAAAGAGCTAGAGGACCGAGCTTCGCTTCAGCTTATTGAAATAGAAAGTCTTCATGAGGAAAGAATACGTATCTTGGAGGAGTTATGTAGACTTCAGAATAAATTAAAAGATGCCAAGTTCATTAGCTCTGCACAAGCCTTCCAGTTGTTGCGAGATCAACTGGAAAAGTCAAAATCAGATGTTCTGGAGTGCCAGGCTTTATATAAGAAACTTCAGTCTGAGAAGGACAGTCTGATCTGGAAGGAGAAGGAATTGAACATCAAATCTGATTTAGTCGATGTGTTTCAGAGATCCTCTGTACTTTCTGATTCCAGAGCAGCTGATTTAGGGGTTCAAATGCAAAGGCTGATTGAGGAAAGTAAAGCGATCGAAAATAAGCTGGAAGAGGCAGTGAGAGAGCCAGGAAGAAAACAGATCATAGCAGAATTTAAATCCCTGGTTTCCTCATTTCCGGAGGAAATGGGCTCTATGCAGCGTCAACTAAGAAATTATAAAGATGCTGCTTCTGATATCCATTCTCTTAGAGCAGATGTGCAGTCTATTTCCTCTATACTCGATAGGAAGGCTAAAGAATGTGGTAGTTTATCTACCAGATCTGACAACCAACTTGCCGAGATTCAAAAGCTGCATACACTGGTCCAAGATCTGAAAGATAGTAAGCTGGATTTGAAGTTGATTTTGGATATGTATAGACGTGAATCCATTGATTCAAGGGATGTCATGGAAGCACGAGATGCTGAATACAAGGCATGGGCTCAAGTTCAGAGTTTGAAATTCTCTCTTGATGAACATAACTTGGAATTGCGTGTGAAAACAGCAAATGAAGCAGAGGCTGTTACCCAGCAGAAGCTGGCTGCTGCAGAAGCTGAGATTGCTGATTTAAGACAGAAGTTGGAAGCTTCTAAACAAGAGATGTCTAGGTTTTCCGATGTCTTAAAATCGAAGAATGATGCAATTGAGGCTTACTTGTCTGAAATAGAGACAATTGGTCAATCATACGATGATATGCAGAGTCAAAATCAACACCTTTTGCAGCAGATAACGGAGCGTGATGATTATAACATCAAGCTTGTTTTAGAAGGTCTAACAGCAAAGCAGAAGCAGAATGTCTTGCTTATGGAAAAGCAGGCCATAGAACAAGAAATTCAACGAGCAACTGCAACCCTTAGCTTGTATGCCATGAAAGATGCCAGAATTCAAGAGCAGTTGAAATTTTGTTCAGATCAGATTCGTAAACTTTCGGAAGAAAGGCTTCAAAATTCAGTCAGTTTGGAAAATACACAGAGAAGATTGTCGGATGTGCAGAGGTCAGCGCAACTTGCAAGGAATTTGCTGGAGGAGATTAAATCTAAAGTTGCAAACAGTCGAATAGCTTATATGGAGTTGCAAATCAAACTTGAGAGAGAAAGATATTCTTTGAAAAGAATAGAAGAGACACTGGAAGTTGCTCGACGCAAGGCATCAAGGCTTGTGGCTAAGATTGAGGACTCCTCAGTTATGGAAAAACTTAAACAAGAACTTAGAGAGTATAAGGATATTGTCAAATGCAGTATTTGTCAAGACAGAATGAAAGAGGTGGTAATAACAAAATGCTATCACTTGTTCTGCAATACATGTGTGCAAAAGAGCCCTGAAAGTAGACACCGGAAGTGTCCTATATGCTCTGCAAGCTTTGGTGCTAACGACGTTAAATTGATATACTTGTAG 2949 0.4059 MTYTIYYIEKCVYDNSLTYTHTHTNTQESQTVSSPFHRLRLLGLSVLRSHFSPFIVSLAGLLLVEVAKLLSTSGLVGLPEYQCMLFCWIGGSLGVVGKVAFWGLWFSMGSMSEPDRKRRHLSSLSPTAAAAAAKKQPFSPISEDKKLDITILQFQNQKLLQKLETQKIEYKSLEDKLLHLKRKQEPYDSTLAVVKKSWEQLIKELELYTIQSKEASNKVYAKRKSDTKGTMSSVEDVFLSRLVETGATESSSTINVDTKKEAVREMKYEKATNILQNIVADINNIWFLKDELQDMVLKDVPEDGFHLQSTTNEVKNLRLALGELHLKHKCLARELQCHRDIDVKKNAELKRLRGDLERKVAELEENNRKIASLKLPKDAVKGTSFPFINLGGKDSAGDKVKDKQKDMQDMESSLKELEDRASLQLIEIESLHEERIRILEELCRLQNKLKDAKFISSAQAFQLLRDQLEKSKSDVLECQALYKKLQSEKDSLIWKEKELNIKSDLVDVFQRSSVLSDSRAADLGVQMQRLIEESKAIENKLEEAVREPGRKQIIAEFKSLVSSFPEEMGSMQRQLRNYKDAASDIHSLRADVQSISSILDRKAKECGSLSTRSDNQLAEIQKLHTLVQDLKDSKLDLKLILDMYRRESIDSRDVMEARDAEYKAWAQVQSLKFSLDEHNLELRVKTANEAEAVTQQKLAAAEAEIADLRQKLEASKQEMSRFSDVLKSKNDAIEAYLSEIETIGQSYDDMQSQNQHLLQQITERDDYNIKLVLEGLTAKQKQNVLLMEKQAIEQEIQRATATLSLYAMKDARIQEQLKFCSDQIRKLSEERLQNSVSLENTQRRLSDVQRSAQLARNLLEEIKSKVANSRIAYMELQIKLERERYSLKRIEETLEVARRKASRLVAKIEDSSVMEKLKQELREYKDIVKCSICQDRMKEVVITKCYHLFCNTCVQKSPESRHRKCPICSASFGANDVKLIYL* 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00376 982 CDD RING-HC_Bre1-like 922 980 - -
Pte5g00376 982 Coils Coil 346 373 - -
Pte5g00376 982 ProSiteProfiles Zinc finger RING-type profile. 930 969 IPR001841 -
Pte5g00376 982 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 911 982 IPR013083 -
Pte5g00376 982 Coils Coil 914 934 - -
Pte5g00376 982 Coils Coil 156 183 - -
Pte5g00376 982 SUPERFAMILY RING/U-box 923 980 - -
Pte5g00376 982 ProSitePatterns Zinc finger RING-type signature. 945 954 IPR017907 -
Pte5g00376 982 PANTHER RING FINGER PROTEIN-RELATED 108 982 IPR013956 GO:0004842|GO:0010390
Pte5g00376 982 Coils Coil 838 865 - -
Pte5g00376 982 Coils Coil 684 725 - -
Pte5g00376 982 Coils Coil 400 434 - -
Pte5g00376 982 Coils Coil 520 547 - -
Pte5g00376 982 SMART ring_2 930 968 IPR001841 -
Pte5g00376 982 Coils Coil 873 907 - -
Pte5g00376 982 Coils Coil 468 488 - -
Pte5g00376 982 Pfam Zinc finger, C3HC4 type (RING finger) 928 970 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00376 Pte-Chr5 3459677 3473370 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00376 930 981 C3H Transcription Factor Family AT5G01960 36.667 3.27e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00376 K10696 - tcc:18614409 1032.71