Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pte5g00368 | ATGGGTATATCTCGTGATTCTATGCATAAGAGACGTGCCACTGGTGGCAAGAAGAAGGCTTGGAGGAAGAAGAGAAAGTATGAGTTGGGAAGGCAAGCTGGCAGCACCAAGTTGTCCAGTAACAAGACTGTTAGGAGAATCAGAGTTCGTGGTGGCAACGTCAAGTGGCGTGCACTCAGGCTTGACACGGGGAACTATTCATGGGGTAGTGAGGCTGTGACCAGGAAGACAAGAATTCTTGATGTTGTGTACAATGCATCTAACAACGAGCTGGTTCGTACCCAGACTTTGGTTAAGAGTGCTATTGTTCAGGTCGATGCTGCACCATTTAAACAGTGGTACCTCCAGCATTATGGTGTTGACGTTGGTCGCAAGAAGAAGACCGCTGGCACCAAGAAGGATGGAGAGGATGCTGAAGCTGCCACTGAAGAAGTGAAGAAAAGTAACCACGTTACGAGGAAGTTAGAGAAGCGTCAACAGAACCGTATGCTTGACTCACATATCGAAGAACAATTTGGTGGAGGTCGTTTGCTTGCTTGCATCTCATCCAGACCTGGTCAATGTGGCCGCGCTGATGGATACATTTTGGAGGGCAAAGAGCTGGAGTTCTACATGAAGAAACTCCAGAAGAAGAAGGGCAAGGGGGCTGCTGCTTAA | 657 | 0.4825 | MGISRDSMHKRRATGGKKKAWRKKRKYELGRQAGSTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDVGRKKKTAGTKKDGEDAEAATEEVKKSNHVTRKLEKRQQNRMLDSHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQKKKGKGAAA* | 219 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pte5g00368 | 218 | PANTHER | 40S RIBOSOMAL PROTEIN S8 | 1 | 214 | IPR001047 | GO:0003735|GO:0005840|GO:0006412 | |
| Pte5g00368 | 218 | MobiDBLite | consensus disorder prediction | 11 | 25 | - | - | |
| Pte5g00368 | 218 | MobiDBLite | consensus disorder prediction | 126 | 151 | - | - | |
| Pte5g00368 | 218 | CDD | Ribosomal_S8e_like | 5 | 196 | - | - | |
| Pte5g00368 | 218 | ProSitePatterns | Ribosomal protein S8e signature. | 11 | 30 | IPR018283 | GO:0003735|GO:0005840|GO:0006412 | |
| Pte5g00368 | 218 | Gene3D | - | 161 | 214 | - | - | |
| Pte5g00368 | 218 | Gene3D | - | 32 | 160 | - | - | |
| Pte5g00368 | 218 | NCBIfam | ribosomal protein eS8 | 1 | 198 | IPR001047 | GO:0003735|GO:0005840|GO:0006412 | |
| Pte5g00368 | 218 | FunFam | 40S ribosomal protein S8 | 32 | 160 | - | - | |
| Pte5g00368 | 218 | Coils | Coil | 138 | 158 | - | - | |
| Pte5g00368 | 218 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
| Pte5g00368 | 218 | FunFam | 40S ribosomal protein S8 | 161 | 214 | - | - | |
| Pte5g00368 | 218 | Pfam | Ribosomal protein S8e | 5 | 196 | IPR022309 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pte5g00368 | Pte-Chr5 | 3354090 | 3356870 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pte5g00368 | 1 | 205 | Cytoplasmic Ribosomal Protein Gene Family | AT5G59240 | 84.878 | 2.31e-125 | 351 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pte5g00368 | K02995 | - | rcu:8277586 | 380.563 |