Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00356 ATGCAAGCATCTCAGAAACATAACATGTTACATGGATCCGACAAGTTCTACGATGATCCTAGGCAAAATCCATGTCCCAATAGCTGGCCTCCAAATGAAAATCTTGGAGACAGTTCATTTTCTGACGACAATAGTCAAACAAACCAAAAAATGTCACTCCAGACATTTGGCCAGTACTGTACACTGGAATCATCCACCACAACGAGTGGCTATGCCGTTCGTAGTTCTTCTACAGAAAGTTTCTCACCTAATGGTAGCCCATTATCACAACCAGGTCCGTCACATGCATCAAAACTTCATCATTCACCTGACAACAGACTTGGCTCCCCAGATAATATTTCATGCTTGACAAATGATGTTGGTGAATTGAGGCACAAGATAAGAGAGTTGGAAACAGTAATGCTAGGACCTGAGTCTGATATAATTGACATATATAATGATGTAAATCCTGGTCTATCTGATTACATGCCATCAGCAGCAGAAAAATGGAACCAGCTGATGGAGACAATATCAAGAGGGGATTTGAAAGAAATGCTTTGCGTGTGTGCAAAAGCATTGGCAGATAATGATATGGAGACAGTCGAATGGCTGTTATCAGAGTTACGCCAGATGGTCTCGGTTTTCGGTGAGCCAATCCAAAGATTAGGAGCATATATGTTGGAAGGCTTAGTTGCAAGGTTGGCCTCTTCTGGAAGCTCCATTTACAAATCACTAAGATGCAAAGAACCTGCTGGTGCTGAACTTCTCTCATACATGCATTTACTCTATGAAATCTGTCCATATTTTAAGTTTGGCTATATGTCTGCAAATGGGGCAATTGCTGAGGCAATGAAAGATGAAAGCAGAATCCACATAATTGATTTCCAAATTGCTCAAGGCAGTCAATGGTTCTCTCTAATCCCAGCCCTAGCCAGCAGACCTGGAGGACCCCCGAGGATAAGAATAACAGGTGTTGATGACTCCACTTCAGCTTATGCCCGCGGCCGTGGCCTTGAAGCCGTGGGACTCAGGTTATCCAAGCTTGCAGAAAAATACAAAGTACCTTTTGAGTTTCATGCAGCTGGACTTAATGGTTCTGTTGTGAAACTTGAAGAACTTGGAATTGAATCCGGTGAAGCAATTGCAGTGAATTTCGCCTTAATGCTCCACCACATGCCAGATGAGAGTGTGAGCATCCATAATCACCGTGATAGATTGATAAGACTGGCTAAGTACTTGTCTCCCAAGGTTGTGACCCTTGTTGAGCAGGAGTCCAACACCAACACTGCTCCTTTTCTCCCACGTTTCATCGAGACACTAGACTATTACACTGCAGTTTTTGAGTCGATTGATGCTACTAATTTCCCAAGGGACCATAAGGAGAGGATTAACGTAGAACAGCACTGTCTTGCTAGAGAAATTGTGAACTTGATAGCATGTGAAGGAGCCAATAGAGTGGAACGTCATGAGCTTCTTAGTAAGTGGAGGTCGAGATTCTCAATGGCTGGATTTACGCCATATCCGCTGAGCTCTTTTGTCAATGCTACCATAAGGGATCTGCTGAAAAACTACAGTGATAAGTACACGTTGGAAGAGAGGACTGGGGCTTTATACCTTGGCTGGATGAGTCGTCCTCTTGTTGCCTCTTGTGCTTGGAGGTGA 1641 0.4357 MQASQKHNMLHGSDKFYDDPRQNPCPNSWPPNENLGDSSFSDDNSQTNQKMSLQTFGQYCTLESSTTTSGYAVRSSSTESFSPNGSPLSQPGPSHASKLHHSPDNRLGSPDNISCLTNDVGELRHKIRELETVMLGPESDIIDIYNDVNPGLSDYMPSAAEKWNQLMETISRGDLKEMLCVCAKALADNDMETVEWLLSELRQMVSVFGEPIQRLGAYMLEGLVARLASSGSSIYKSLRCKEPAGAELLSYMHLLYEICPYFKFGYMSANGAIAEAMKDESRIHIIDFQIAQGSQWFSLIPALASRPGGPPRIRITGVDDSTSAYARGRGLEAVGLRLSKLAEKYKVPFEFHAAGLNGSVVKLEELGIESGEAIAVNFALMLHHMPDESVSIHNHRDRLIRLAKYLSPKVVTLVEQESNTNTAPFLPRFIETLDYYTAVFESIDATNFPRDHKERINVEQHCLAREIVNLIACEGANRVERHELLSKWRSRFSMAGFTPYPLSSFVNATIRDLLKNYSDKYTLEERTGALYLGWMSRPLVASCAWR* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00356 546 Coils Coil 113 133 - -
Pte5g00356 546 Pfam GRAS domain family 176 546 IPR005202 -
Pte5g00356 546 MobiDBLite consensus disorder prediction 28 52 - -
Pte5g00356 546 MobiDBLite consensus disorder prediction 1 52 - -
Pte5g00356 546 MobiDBLite consensus disorder prediction 71 113 - -
Pte5g00356 546 MobiDBLite consensus disorder prediction 71 96 - -
Pte5g00356 546 ProSiteProfiles GRAS family profile. 166 546 IPR005202 -
Pte5g00356 546 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 127 540 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00356 Pte-Chr5 3264617 3267792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00356 1 547 GRAS Transcription Factor Family AT1G50600 58.664 0.0 627
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pte5g00356 GRAS 8.6e-134 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00356 - - cave:132173625 771.926