Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00353 ATGGGTCAATCAGAGATTGAGAAAAATATGAACATTGATTGGGAACGAGCATTCAGCCAGTATGAATATGTTATGGCTTCTGGGATGAAGGATATGCAAGTAAAGGCAACAATTAAACTTGCCCATCTCAGTAAACACGTTCCGGAATACGTATTAGTTCGGAGCATTTCCATTCTGTCAGAAATTCTTGAGAGTGACCCGTCAAATGATTCAGACCGTTTTCTTGTTCAGGCTTCTGCTTATTGCTTAAAGTCCATATCTTGTAGAGGTGATGGTGGCTTGGCTATGGAAATAGGTAGAGATAGTACTTTGCGTTCTTTAGTAAGGTTGTTGTTGGGTTATTCTGATACGAGGTTTCTGAAAGTTGTTGTGAAATGTTTGAGGAATGTTGTCACTTTCTGTATTATAAGTAGAGCTAGTTTAGCTGACAATGGTGGGCTGCAGGTTATAATTGGTTTGTTGAATTCGTCTGTGGGTAATATCCGGCGGTATTTGTTGGAAATTTTGAGTGCACTGGCGTTGTTGAGAGATGTTAGGAGGAAACTCGTTAGTTTGGGAGGTCTACGCTTTCTCATTGAGGCTGCTACACTTGGCAGTATGGTATCGAGAGAAAGAGCTTGTCACGTTATTGGATTACTTGGAATCAGTAGCCGTTTAAGGCGTGAGTTCGTCAATTTCGGTGCAATCCCTGTGCTCGTTGAATTGTTTCATGACGGAGACATTACAACAAAACTCGCAGTTGGCAACTCTCTTGGTGTGATCTCCTCACACGTCGATTATATCAGGCTTGTTGCTGAGGCTGGGGCAATTCCTCTTTATGCAGAACTTCTTGCAGGACCTGAACCTCAGGGCAAGGAGATTGCAGAAGATGCCTTCTGTTTATTAGCAGTTTCTGAGGGAAATGTTGTGGAAATTGGAATGCATTTGGGGAGGATTCTTAGAGAGGGAGATAAAGTTTCCAAGGCTGCAGTTGCTGATGTCATTTGGAATCTATCAGGATACAGTCACTCGGTTGCGATTGTTCAAATTTCTGGTGCAATTCCAATCCTGTTTGAGCTTTTAACGGATGACAGTTCCGAGGTACGGGAAAAGGTTTCTGGGGCATTTGCTCAATTGAGTAATGATGACGAGCACAGAATAGCACTCGCTGATGTAGGGGCAATCCAAGTTCTCATAGAGATGTTGCAGGACGAGTCAGAGGAATGCAGAGATAATGCTGCAGAGGCCCTCATCAATTTTGCTGAGGATCCTGAGTTGCATGATAAAGTATCAGATGCAATTAACACTCCTTCTTTCCGTGATATGCAGAATAGACTTGCACGAATTCGTATTTCTGACGAGCATCTTGCAAGATCCTTGAGAAGAATAAGTGTTGAGCAGCTAAGTCGGGACCCTAATCTTCTCTAA 1407 0.4279 MGQSEIEKNMNIDWERAFSQYEYVMASGMKDMQVKATIKLAHLSKHVPEYVLVRSISILSEILESDPSNDSDRFLVQASAYCLKSISCRGDGGLAMEIGRDSTLRSLVRLLLGYSDTRFLKVVVKCLRNVVTFCIISRASLADNGGLQVIIGLLNSSVGNIRRYLLEILSALALLRDVRRKLVSLGGLRFLIEAATLGSMVSRERACHVIGLLGISSRLRREFVNFGAIPVLVELFHDGDITTKLAVGNSLGVISSHVDYIRLVAEAGAIPLYAELLAGPEPQGKEIAEDAFCLLAVSEGNVVEIGMHLGRILREGDKVSKAAVADVIWNLSGYSHSVAIVQISGAIPILFELLTDDSSEVREKVSGAFAQLSNDDEHRIALADVGAIQVLIEMLQDESEECRDNAAEALINFAEDPELHDKVSDAINTPSFRDMQNRLARIRISDEHLARSLRRISVEQLSRDPNLL* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00353 468 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 4 ARMC4 315 423 - -
Pte5g00353 468 Gene3D - 256 429 IPR011989 -
Pte5g00353 468 Pfam HEAT repeats 312 410 - -
Pte5g00353 468 SUPERFAMILY ARM repeat 69 421 IPR016024 -
Pte5g00353 468 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 345 387 IPR000225 GO:0005515
Pte5g00353 468 SMART arm_5 257 297 IPR000225 GO:0005515
Pte5g00353 468 SMART arm_5 216 256 IPR000225 GO:0005515
Pte5g00353 468 SMART arm_5 91 132 IPR000225 GO:0005515
Pte5g00353 468 SMART arm_5 375 415 IPR000225 GO:0005515
Pte5g00353 468 SMART arm_5 334 374 IPR000225 GO:0005515
Pte5g00353 468 Coils Coil 392 412 - -
Pte5g00353 468 Gene3D - 23 255 IPR011989 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00353 225 416 U-box Gene Family AT2G23140 28.934 1.46e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00353 - - qsu:112006218 535.028