Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00351 ATGGTAGCTGCTCAAGTTCGTACAGTTATGGACGCAAAAAGTTTACAGGGGAGCAGTTTTGAACCCAAAACTCCTCTCTTTAAGCTGACTGAAATTGGCCATGTTGATGTGAGTTACAATTTTTTTATCCTGGTCTTTTTGGTTTTCTTGAATTGGCTTAACGAGTTTTCAGCAGAAGGTGCTACTGCTGATGCCTATGCCAGGAACTATATTAGTTGGGATGATTTGAGAGTTAATGAACAAAAAGTGAGCTTCAACTCAAAAACTGAAAATGAGATTGATAAGATCATTGTGGTTGACAAGAATGGTGGTGGGAATTCAGTTACCATTCAAGGTGCAGTTGACATGGTTCCAGATTTTAGCACGCAAAGAGTGAAGATTTACATTCGTCCAGGAGTTTACAGGGAAAAGGTACACGTGCCAACTTCCAAACCATATGTTTCATTCATTGGTAACGAAAATGGTGGTTCAAGAACTATAATCTCATGGAACAGTAAGGCGTCAGATATAGACCCAAATGGGGGTGAAGTTGGCACTTACAGATCAGCTACAGTAACCGTAGAATCAGATTATTTCTGTGCAACTGGGATCACATTTGAGAATACTGTTCTTGCAGTGCCAGGTGGACATGGAATGCAAGCAGTTGCACTAAGAATAGCTGGTGATAAAGCAGTGTTCTACCAAATTCGAGTCTTAGGAACCCAGGATACACTTTTAGACGACACAGGAACTCACTACTTCTATAGGTCTCACATTCAAGGAAGTGTCGATTTCATATTTGGCAGTTCAAAGTCACTCTTTCAGGACTGCGTCATTGAATCAACAGCTCAGAACTTCGGAGCCATTGCAGCTCACCACAGAGATTCACCATATGAAGATACAGGATTTTCATTTGTGAACTGCACAATTCAAGGAACTGGTAGTGTCTTCCTAGGAAGAGCTTGGGGGAACTATTCAAGAGTAATATACTCGTACTGTTACATGGAGAACATCATAGCTCCTGCAGGGTGGAGTGATTGGAATCGCCCTCTGAGACAAAAGACTGTTGTGTTTGGGGAGTACCAGTGTAATGGTGGGGGAGCGAATTCAAGAGGCAGAGTGCCATGGTCCAAGATTTTCAATTACGAAGAAGTGAAGCAATTTCTGAACAAGCTATACATAAATGGAGACCAATGGCTTCGATTATGA 1188 0.4167 MVAAQVRTVMDAKSLQGSSFEPKTPLFKLTEIGHVDVSYNFFILVFLVFLNWLNEFSAEGATADAYARNYISWDDLRVNEQKVSFNSKTENEIDKIIVVDKNGGGNSVTIQGAVDMVPDFSTQRVKIYIRPGVYREKVHVPTSKPYVSFIGNENGGSRTIISWNSKASDIDPNGGEVGTYRSATVTVESDYFCATGITFENTVLAVPGGHGMQAVALRIAGDKAVFYQIRVLGTQDTLLDDTGTHYFYRSHIQGSVDFIFGSSKSLFQDCVIESTAQNFGAIAAHHRDSPYEDTGFSFVNCTIQGTGSVFLGRAWGNYSRVIYSYCYMENIIAPAGWSDWNRPLRQKTVVFGEYQCNGGGANSRGRVPWSKIFNYEEVKQFLNKLYINGDQWLRL* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00351 395 SUPERFAMILY Pectin lyase-like 95 393 IPR011050 -
Pte5g00351 395 FunFam Pectinesterase 92 395 - -
Pte5g00351 395 ProSitePatterns Pectinesterase signature 2. 252 261 IPR033131 -
Pte5g00351 395 Gene3D - 90 395 IPR012334 -
Pte5g00351 395 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 88 394 - -
Pte5g00351 395 Pfam Pectinesterase 97 390 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00351 Pte-Chr5 3206362 3208908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00351 68 347 Carbohydrate Esterase AT5G55590 63.300 1.08e-137 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00351 K01051 - qsa:O6P43_013577 538.495