Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00345 ATGGCTATGAATGGGGCAAAGGAGCCATTGTTGTCAAGACCAAACGATCCTATGCCTCGGACGACCTGCAAAAATTATATGAAGGGCAGGTTCCGCCGCATTAGAACTTGTCCTGTTGTGGATGCCATTCATATGGATATAAAGGAAATGAACCCAATCCCACGTGCTGAATCTATATTTGGCAATGTACACCCGAGCTTCAGAAAAGTGGCTTTGCTCCTGGCTATATATTTAGGTTTTGCAGCTGTATGCTTCTACCTTGTCAGGCATCAAATCAAAGGGGTCAAGACAAATGGACTTCTTGATGCGATATACTTCTCTATAGTGACAATGACGACGGTCGGGTATGGAGACCTTGTGCCTAATAGTGATCTTGCAAAACTTCTTGCTTGTGCTTTTGTCTTTTCAGGAATGGCTCTGGTTGGCCTAATCCTAAGCAAAGCGGCCGATTACTTGGTAGAGAAGCAAGAAGTTTTACTAGTTAAGGCCATGCATATGCATCAAAAAGTTGGTCGTAATGAAATCTTGAAGGAAATTGAGACCAACAAAGCAAAATATAAATTCTTTCTATCATTTTTCCTTCTTTTAGCTATCGTTATCATAGGAACAATTTTCTTAATCAAAGTTGAAAATTTGAGTGCTGTTGATGCTTTCTATTGTGTTTGCTCAACAATCACCACGCTTGGATATGGAGATAAGAGCTTCTCAACTGAAGGAGGAAGAGTTTTTGCTGTGTTTTGGATACTAATGGGTACTATTTGTGTAGCTCAGTTCTTCCTCTACCTTGCTGAGTTTAACACAGAAAAGAGACAAAAGGAAATAGTGAATTGGGTTCTTACACGAAAAATGACCAATACGGATTTGGAGGCGGCCGATATAGATGAAGATGGCAGAGTTGGTGTTGCAGAATTCGTCGTTTATAAGCTCAAAGAGATGGGGAAGATCAATGAAGAAGACATCAATCTTGTGTTAGAGGAGTTTGAAGAGCTTGATGTTGATCAATCTGGGACATTGTCCATGTCTGACTTAATACTTGCTCAATCATCTCAACCAGAGAGGACAGCCTAG 1068 0.4064 MAMNGAKEPLLSRPNDPMPRTTCKNYMKGRFRRIRTCPVVDAIHMDIKEMNPIPRAESIFGNVHPSFRKVALLLAIYLGFAAVCFYLVRHQIKGVKTNGLLDAIYFSIVTMTTVGYGDLVPNSDLAKLLACAFVFSGMALVGLILSKAADYLVEKQEVLLVKAMHMHQKVGRNEILKEIETNKAKYKFFLSFFLLLAIVIIGTIFLIKVENLSAVDAFYCVCSTITTLGYGDKSFSTEGGRVFAVFWILMGTICVAQFFLYLAEFNTEKRQKEIVNWVLTRKMTNTDLEAADIDEDGRVGVAEFVVYKLKEMGKINEEDINLVLEEFEELDVDQSGTLSMSDLILAQSSQPERTA* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00345 355 SUPERFAMILY Voltage-gated potassium channels 64 167 - -
Pte5g00345 355 MobiDBLite consensus disorder prediction 1 20 - -
Pte5g00345 355 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 100 321 IPR003280 GO:0005267|GO:0016020|GO:0071805
Pte5g00345 355 Gene3D - 192 253 - -
Pte5g00345 355 SUPERFAMILY Voltage-gated potassium channels 180 314 - -
Pte5g00345 355 Gene3D - 64 158 - -
Pte5g00345 355 FunFam Calcium-activated outward-rectifying potassium channel 1 64 159 - -
Pte5g00345 355 FunFam Two-pore potassium channel 1 168 276 - -
Pte5g00345 355 SUPERFAMILY EF-hand 282 348 IPR011992 -
Pte5g00345 355 ProSitePatterns EF-hand calcium-binding domain. 331 343 IPR018247 -
Pte5g00345 355 Gene3D - 254 352 - -
Pte5g00345 355 PRINTS Two pore domain K+ channel signature 109 137 IPR003280 GO:0005267|GO:0016020|GO:0071805
Pte5g00345 355 PRINTS Two pore domain K+ channel signature 226 235 IPR003280 GO:0005267|GO:0016020|GO:0071805
Pte5g00345 355 ProSitePatterns EF-hand calcium-binding domain. 292 304 IPR018247 -
Pte5g00345 355 Pfam Ion channel 194 267 IPR013099 -
Pte5g00345 355 Pfam Ion channel 73 153 IPR013099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00345 Pte-Chr5 3172808 3175436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00345 47 353 Ion Channels AT5G55630 62.013 3.38e-145 413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00345 K05389 - tcc:18593302 468.388