Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pte5g00328 | ATGGCCTCAAGACCTGGTGCCAGAAGTTCCCCAGAGAAACAAAGAAAATTGTCTGGTAGCCAAACTACAGAAGTGAATTCTCGAAGACCTTCTCCGTTGGTTATATCCAAGACAAGCAAGTCAGAACCAGCCACGCCAAGGAAATTACCTGGGAATGTACGACAACCTTCATCAAAGCAGGTTTTATTAGGTGTAGAGGACAGAAAATTGGCTAGTTCTCGCAATAAAGGTTCACTCAGTCATTTGGCATCTGCGGTTGATTCTGGTTTATCTTTGGGAGATTCAAAATACCTTCCAACAGATGAGGATCATGGTAGGGATGCTACTGGAGTGTTGATACCAGTCACGTCAAAAGTCAGTGATGGGACTGGCAGTGTGCCAAAGACAAGTGGAAATGGGGAGAATAGAGGTCGAGCTGATGTTGTCGAAAGTGGGAAGAGCAGCATCTGCAGAGGCAGCACAAGCAGTGATGTGAGCGATGAAAGTACTTGCAGCAGCTTAAGTAGTGCTATCAACAAACCTCACAAGGCTAATGACATGCGTTGGGAAGCAATACAGGTAGTCCGAGCAAAAGATGGTGTTCTAGGATTAAGTCATTTCAGACTGCTGAAGAAGTTGGGATGTGGAGATATTGGGAGTGTCTATCTATCGGAGCTTAGTGGAACGGAATGTTATTTTGCAATGAAAGTTATGGATAAAGCATCTTTAGCCAGCAGAAAGAAGATGCCACGGGCGCAGACAGAAAGAGAAATATTACAATCATTGGACCACCCTTTCCTTCCCACTTTATACAGCCATTTTGACACTGAAAAATTCTCATGTCTAGTGATGGAGTTCTGCCCTGGTGGTGATTTGCATACCCTGCGCCAGAAGCAACCAGGAAAACATTTTTCTGAACAAGCAGTGAAGTTTTACATAGCAGAGATTCTTCTTGCTCTGGAATATCTCCACATGCTTGGAATTGTTTACCGTGACCTCAAGCCGGAAAATGTCCTGGTGAGGGAAGATGGCCACATAATGCTCTCTGATTTTGACCTTTCCCTCCGATGTACTGTCAGCCCTACCTTAGTCAAGTCTTCAGTAGTTGGATCTGAACCCTTGCGGAAGAACTCAATTAATTGTACCCAACCTGTTTGTATCCAGCCTTCTTGTATCCAGCCATCCTGTATGACATCTACAACTTGTTTCTCCCCTCGATTCTTTCTAAGCAAATCTAAGAAGGACCAGAAACCGAAGAATGAAACTGGAAATCAAGTCAGACCCTTGCCAGAGCTTATTGCTGAGCCAACCAATGCACGGTCAATGTCATTTGTAGGAACACACGAGTATTTAGCACCTGAGATTATAAAAGGTGAAGGGCATGGTAGTGCTGTTGATTGGTGGACCTTTGGGATCTTCCTGTATGAGCTATTGTTTGGGAAGACACCGTTCAAAGGTTCGGGCAACAGGGCCACCCTTTTCAATGTTGTCGGTCAACCACTGCGATTCCCGGAAACACCAGCTGTCAGTTTTGCTGCAAGGGACTTGATAAGGGGCTTGCTGGTGAAAGAGCCCCAGCATAGGCTTGCATACAAGCGTGGAGCAACTGAGATCAAACAGCATCCTTTCTTTGAAGGTGTGAATTGGGCACTTATTCGGTGTGCAACCCCCCCTGAGGTGCCAAAACCAGTTGACCTTGAGAAGGTTCCCGCCACAACAGCATCAATCGGTAACAAATATATGGGCACAGATCAAAATAATTACCTTGAATTTGATTTCTTTTAG | 1764 | 0.4507 | MASRPGARSSPEKQRKLSGSQTTEVNSRRPSPLVISKTSKSEPATPRKLPGNVRQPSSKQVLLGVEDRKLASSRNKGSLSHLASAVDSGLSLGDSKYLPTDEDHGRDATGVLIPVTSKVSDGTGSVPKTSGNGENRGRADVVESGKSSICRGSTSSDVSDESTCSSLSSAINKPHKANDMRWEAIQVVRAKDGVLGLSHFRLLKKLGCGDIGSVYLSELSGTECYFAMKVMDKASLASRKKMPRAQTEREILQSLDHPFLPTLYSHFDTEKFSCLVMEFCPGGDLHTLRQKQPGKHFSEQAVKFYIAEILLALEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCTVSPTLVKSSVVGSEPLRKNSINCTQPVCIQPSCIQPSCMTSTTCFSPRFFLSKSKKDQKPKNETGNQVRPLPELIAEPTNARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPETPAVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPEVPKPVDLEKVPATTASIGNKYMGTDQNNYLEFDFF* | 588 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pte5g00328 | 587 | Pfam | Protein kinase domain | 434 | 537 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Pte5g00328 | 587 | Pfam | Protein kinase domain | 201 | 364 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Pte5g00328 | 587 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 321 | 333 | IPR008271 | GO:0004672|GO:0006468 | |
| Pte5g00328 | 587 | MobiDBLite | consensus disorder prediction | 114 | 170 | - | - | |
| Pte5g00328 | 587 | Gene3D | Phosphorylase Kinase; domain 1 | 198 | 283 | - | - | |
| Pte5g00328 | 587 | MobiDBLite | consensus disorder prediction | 147 | 170 | - | - | |
| Pte5g00328 | 587 | FunFam | Serine/threonine-protein kinase AGC1-7 | 430 | 555 | - | - | |
| Pte5g00328 | 587 | MobiDBLite | consensus disorder prediction | 1 | 81 | - | - | |
| Pte5g00328 | 587 | PANTHER | FLIPPASE KINASE 1-RELATED | 76 | 561 | - | - | |
| Pte5g00328 | 587 | FunFam | Serine/threonine-protein kinase D6PK-like | 198 | 283 | - | - | |
| Pte5g00328 | 587 | CDD | STKc_phototropin_like | 198 | 561 | - | - | |
| Pte5g00328 | 587 | MobiDBLite | consensus disorder prediction | 13 | 59 | - | - | |
| Pte5g00328 | 587 | FunFam | serine/threonine-protein kinase D6PK-like | 284 | 351 | - | - | |
| Pte5g00328 | 587 | MobiDBLite | consensus disorder prediction | 116 | 132 | - | - | |
| Pte5g00328 | 587 | Gene3D | Transferase(Phosphotransferase) domain 1 | 284 | 353 | - | - | |
| Pte5g00328 | 587 | ProSiteProfiles | Protein kinase domain profile. | 200 | 537 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Pte5g00328 | 587 | SUPERFAMILY | Protein kinase-like (PK-like) | 176 | 559 | IPR011009 | - | |
| Pte5g00328 | 587 | Gene3D | Transferase(Phosphotransferase) domain 1 | 431 | 555 | - | - | |
| Pte5g00328 | 587 | SMART | serkin_6 | 200 | 537 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pte5g00328 | Pte-Chr5 | 3037651 | 3040205 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pte5g00328 | 115 | 588 | AGC Kinase Gene Family | AT5G47750 | 81.443 | 0.0 | 813 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | AGC_RSK-2 | Pte5g00328 | Pkinase | 3.1e-38 | CL0016 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pte5g00328 | K08286 | - | qsu:111993832 | 912.524 |