Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00309 ATGGATGGTCATTCATATGCTAATGAGAAGAATGATCTGCAGATAAGACCACGCCGTCGTCGTAGCAGCCTTTCTGATTTGAAAAGTAATCGTTCTGTTAAGCATGATGAGATTAAACTTACCAAAAGAGAATTCAATGGCAAGAAAGTTCTTCTTTGGTTTGTCCTATACCTTGGTGGAGGCACACTTTGTTTTTACCTTATCAGAGATCAGATAAAGGGGAAGAAAACCAATGGATTTCTTGATGCAGCTTACTTTAGTGTTGTCACAATGACTACTGTCGGTTACGGGGATCTTGTTCCTGATAGCATGTTGGCAAAACTCATGGCATGTGTCTATGTTTTCACTGGCATGGCTTTCGTTGGCATTGTTCTAAGCAGGGCAGCGGATTACCTAGTAGAAAAGCAAGAAATTTTAATGGCCAAAGCCATAAACATAGGTGAGAAGGTTGGTCCCTCCGAGCTCCACGACGAAGTGGAAGCTCACAAAGTGAAATATAAATTCATGATGACAGCCTCGGTGCTATTAATGCTTATCATAACAGGAACTCTATTCTTGTATTTCGTCGAACACTTGAACTCTGCGGATGCATTCTACTGTGTTTGTTCTACCATTTCCACTCTGGGTTATGGGGATGCTAGCTTCTCAACTTTGCTTGGTCGCGCCTTTGCTATTGTTTGGATAATTACCAGTACTTTGTGCTTGGCTCAGTTCTTTCTTTATGTCGCTGAGCTTTACACTGAAACAAGACAGAACTCATTGGTCAAAATTGTTCTTGGACGAAGATTTTCATACTCAGATCTCGAGGCAGCTGATCTTGATCATGATAACTCGGTCAGTGTTGCAGAGTTTATTGTGTATAAATTGAAGGAAATGGAGAAGATCAGCGACAAAGATATCTCAATCATCATGGAGACATTTAAGAAACTAGATGCTGATCACTCTGGAACTTTGACCACAGATGATCTAAAATTTCCTGAATTGAAAAGACATACCTGA 999 0.4044 MDGHSYANEKNDLQIRPRRRRSSLSDLKSNRSVKHDEIKLTKREFNGKKVLLWFVLYLGGGTLCFYLIRDQIKGKKTNGFLDAAYFSVVTMTTVGYGDLVPDSMLAKLMACVYVFTGMAFVGIVLSRAADYLVEKQEILMAKAINIGEKVGPSELHDEVEAHKVKYKFMMTASVLLMLIITGTLFLYFVEHLNSADAFYCVCSTISTLGYGDASFSTLLGRAFAIVWIITSTLCLAQFFLYVAELYTETRQNSLVKIVLGRRFSYSDLEAADLDHDNSVSVAEFIVYKLKEMEKISDKDISIIMETFKKLDADHSGTLTTDDLKFPELKRHT* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00309 332 ProSitePatterns EF-hand calcium-binding domain. 272 284 IPR018247 -
Pte5g00309 332 ProSitePatterns EF-hand calcium-binding domain. 311 323 IPR018247 -
Pte5g00309 332 Gene3D - 153 258 - -
Pte5g00309 332 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 49 301 IPR003280 GO:0005267|GO:0016020|GO:0071805
Pte5g00309 332 Pfam EF hand 305 324 IPR002048 GO:0005509
Pte5g00309 332 Gene3D - 48 143 - -
Pte5g00309 332 SUPERFAMILY Voltage-gated potassium channels 164 296 - -
Pte5g00309 332 Gene3D - 259 329 - -
Pte5g00309 332 Pfam Ion channel 174 246 IPR013099 -
Pte5g00309 332 Pfam Ion channel 53 133 IPR013099 -
Pte5g00309 332 SUPERFAMILY EF-hand 289 323 IPR011992 -
Pte5g00309 332 PRINTS Two pore domain K+ channel signature 206 215 IPR003280 GO:0005267|GO:0016020|GO:0071805
Pte5g00309 332 PRINTS Two pore domain K+ channel signature 89 117 IPR003280 GO:0005267|GO:0016020|GO:0071805
Pte5g00309 332 SUPERFAMILY Voltage-gated potassium channels 47 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00309 Pte-Chr5 2884721 2885825 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00309 46 323 Ion Channels AT5G55630 59.353 3.85e-118 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00309 K05389 - qsa:O6P43_031367 417.157