Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00305 ATGGCTGACTCGGACAACGAATCAGGAGGTCAAACTGGAGTTCATAGTGGCAGCAGTGAATTGCCAGGATGCAGAGAGCAAGACAGTTTTCTTCCCATAGCAAACGTGAGTAGGATCATGAAGAAAGCATTACCAGCAAACGCTAAGATCTCAAAGGAAGCCAAGGAGACCATACAAGAGTGTGTGTCAGAGTTTATCAGCTTCATCACTGGGGAGGCATCAGATAAGTGTCAGAAGGAGAAGAGGAAGACGGTCAACGGGGATGACATCTTGTGGGCCATGACCACACTGGGGTTTGAGGATTATGTGGATCCCTTGAAGTTTTATCTGCAGAAGCATAGGGAGATGGAAGGGGAGAAGACTGTCTTGGTAGGTACACAGCAGGGTGATCATGAGGGGAATCATGGAAATGGTGGTGCAGGTGGTAGTCTTGTCTATGGTCATGAGGGTGGAGGTGGGGTGCAGTCCACTATGATGATGATGATGGGACATCATCCTCAGAAAAAACATATGTATGGATCTGGAAATGAGGGTGGAACCTCTTCCGGAAGGAACAGGTAG 561 0.4813 MADSDNESGGQTGVHSGSSELPGCREQDSFLPIANVSRIMKKALPANAKISKEAKETIQECVSEFISFITGEASDKCQKEKRKTVNGDDILWAMTTLGFEDYVDPLKFYLQKHREMEGEKTVLVGTQQGDHEGNHGNGGAGGSLVYGHEGGGGVQSTMMMMMGHHPQKKHMYGSGNEGGTSSGRNR* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00305 186 MobiDBLite consensus disorder prediction 166 186 - -
Pte5g00305 186 Gene3D Histone, subunit A 21 137 IPR009072 GO:0046982
Pte5g00305 186 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 18 155 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pte5g00305 186 SUPERFAMILY Histone-fold 27 129 IPR009072 GO:0046982
Pte5g00305 186 FunFam Nuclear transcription factor Y subunit B-3 19 141 - -
Pte5g00305 186 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Pte5g00305 186 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Pte5g00305 186 MobiDBLite consensus disorder prediction 1 18 - -
Pte5g00305 186 MobiDBLite consensus disorder prediction 1 25 - -
Pte5g00305 186 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Pte5g00305 186 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Pte5g00305 186 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00305 Pte-Chr5 2871469 2872460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00305 1 165 CCAAT-HAP3 Transcription Factor Family AT4G14540 69.697 2.90e-71 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pte5g00305 CBFD_NFYB_HMF 8.9e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00305 K08065 - gmx:100305641 243.817