Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00295 ATGGAGAAAGAACCTGGTAAGCTTTTCATCGGTGGGATTTCATGGGACACAAGTGAAGACCGCCTGAGACAGTATTTTGAAATGTACGGAGATGTGATAGAAGCTGTGATAATGAAGGACAGGGTCACTGGGCGTGCACGTGGCTTTGGGTTTGTTGTTTATGCTGATTCTGCTGTGGCTGATCTAGTGGTTATGGAAAAACACATAATTGACGGAAGAACAGTTGAAGCAAAGAAAGCTGTTCCAAGAGATGATCAGAACAGTCTGACCAAAAGCAATGTTAGCATGCATAGCTCCCCCGGTCCTATCCGTACTAAGAAGATTTTTGTGGGAGGTTTAGCATCTACTGTAACTGAGAGTGATTTTAAGAAGTACTTTGATCAGTTCGGAACAATTACTGATGTTGTAGTGATGTATGACCATAACACACAGAGGCCAAGAGGTTTTGGATTTATAACTTATGATTCGGAGGAAGCAGTGGAGAGAGTTCTGTACAAAACCTTTCATGAACTCAATGGTAAGATGGTTGAGGTTAAGCGAGCTGTCCCAAAGCAGTTAGCTCCTGGGCCAAATAGGGGTCAATTAGTGGGAAGCAGCTATGGGGTGAATAGAGTTAGCAACTTTCTTAATGGTTACGTTGAGGGATGTAGTCCAAGTTTAGTTGGAGGACATGGAATCAGTATGGATGAGAGGATTAGTTCTCTCTTGCTTGGACGGAGTGGATATCCATTTTTTGGTCCTAATTATGGGACAGGACTTAATCTTGAGCCAGCAGTAAAACAAAGTACAAACTTTATTGGGGACCATATTGTTGGACGGCAACTAAATTCCTTGTTTACTGGCAGTCCAAACAGGTATAGTACAGATATTGGGTATAGTTCTGTAAGTGGAGGTAGTAATCCATCCTTAAATTCAAGTATTCAGAGTCTGTGGGGAAATGGGGGCCTTACAAGTGTCACTAGGTCTCTAAACTCTGGATCTTTTGTGGGATATGGAAGTGATTCCGGCGTAGGTACTTTTGGTAGTATTGGAACAACCTGGAGTTCCACAAGAAATTCAGGGCTAGGAGCAGCCCGTTCCACCTTCAGTAATCAAGATGGTAGTTATGGCAGTGGAAATATAAATTTGGGATTAGGATCAGAAGGATATGGAAGGAAAAATGGAGCCATTGGGTCACCAGCCTTGTCATATGCTGCACCTCGTAGCAACTACAGTAGGGATTCTACGGATGATTTTGAACTTGGGTTATTTCATGGGAAATCTACGTGGTTGCCATCACCATTAGAGATGGAAAATTCTGGTTCATTGGGTTATGGTTTTGGAAATATGACTTCAGATTTGATGAGTCAAAGGTCCACTGGTTTGATTGGAACATAG 1377 0.4241 MEKEPGKLFIGGISWDTSEDRLRQYFEMYGDVIEAVIMKDRVTGRARGFGFVVYADSAVADLVVMEKHIIDGRTVEAKKAVPRDDQNSLTKSNVSMHSSPGPIRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVERVLYKTFHELNGKMVEVKRAVPKQLAPGPNRGQLVGSSYGVNRVSNFLNGYVEGCSPSLVGGHGISMDERISSLLLGRSGYPFFGPNYGTGLNLEPAVKQSTNFIGDHIVGRQLNSLFTGSPNRYSTDIGYSSVSGGSNPSLNSSIQSLWGNGGLTSVTRSLNSGSFVGYGSDSGVGTFGSIGTTWSSTRNSGLGAARSTFSNQDGSYGSGNINLGLGSEGYGRKNGAIGSPALSYAAPRSNYSRDSTDDFELGLFHGKSTWLPSPLEMENSGSLGYGFGNMTSDLMSQRSTGLIGT* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00295 458 CDD RRM2_Hrp1p 107 184 - -
Pte5g00295 458 SUPERFAMILY RNA-binding domain, RBD 105 193 IPR035979 GO:0003676
Pte5g00295 458 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 3 454 - -
Pte5g00295 458 SMART rrm1_1 107 179 IPR000504 GO:0003723
Pte5g00295 458 SMART rrm1_1 7 78 IPR000504 GO:0003723
Pte5g00295 458 Gene3D - 5 88 IPR012677 -
Pte5g00295 458 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Pte5g00295 458 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Pte5g00295 458 Gene3D - 103 189 IPR012677 -
Pte5g00295 458 SUPERFAMILY RNA-binding domain, RBD 4 94 IPR035979 GO:0003676
Pte5g00295 458 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Pte5g00295 458 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Pte5g00295 458 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 68 IPR000504 GO:0003723
Pte5g00295 458 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 166 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00295 Pte-Chr5 2798862 2802100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00295 6 184 Eukaryotic Initiation Factors Gene Family AT4G34110 24.176 6.62e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00295 K14411 - qsa:O6P43_031333 573.163