Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00294 ATGGTTTTTCTAGAAGATTCTCGTTCAAATTCCAGCAGATTCCCTGTACCGAGAAACTACTACTCACCATCTTCTTCTTCCACCAGAATCAGCAGAAGTATCGGGCGGTCCATGCGTACTGTTCGCTCTACCTTGTTCCAAGATGACCACACTTGCTCTTTCACTACAGCTACCGAAAAATCCGGCTGCGTTTCCGAGAATCTAACAGATTCCGTTGTGGACATGAGACTCGGCGAGCTCGCTTCCAAAACAAACAAATCGGCCCAGTCTTCTTGTACGGAAGAGGATTTCCTTGACCTCTCTCAGGCGTTCAGTGATTTTTCCGCTTGTAGCAGCGATATTTCCGGGGAGTTGCAGAGGCTTGCGTGTTTGCCGAACTCGGAGAATGTGGAGGGAAACGACGGTGGGGAAGTAAAGATGGAAGTTGAACAGGAACCTGAGCCGTGCTTGGGTTTTCTTCAGAGGGAGAATTTTTCAACGGAGATTATGGAGAGTATCTCGCCGGAGGATCTTCAACCGACGGTGAAGATCTGTATTGATGGTCTTCAGTCATCCTCGGTAGCGGTGAAGCGGTCTGCTGCGGCCAAGCTTAGGTTGCTTGCGAAGAACCGAGCTGATAATCGAGCTTTGATTGGTGAATCTGGTGCAATCCCCGTTTTAATTCCGTTGCTTCGTTGTACTGATCCTTGGACACAAGAACACGCTGTGACGGCTTTGCTGAATCTTTCACTGCATGAAGATAACAAGATGGTGATTACTAACGCTGGTGCTATAAAGTCATTCGTATATGTGTTGAAAACCGGTACTGAGACCTCAAAACAAAACGCTGCTTGTGCGTTGTTAAGTCTATCGTTGGTTGAAGAAAACAAGAGTTCCATTGGAGCTTGCGGGGCAATACCCCCACTGGTTGCGTTGTTGTTGAATGGGTCTAATAGAGGGAAGAAGGATGCATTGACGACACTGTATAAGCTCTGTTCGATAAAAAGTAACAAAGGAAGAGCTGTAAGTGCTGGGGCCGTGAAACCACTCGTGGCTTTGGTGGCAGAACAAGCTACGAGTTTGGCTGACAAGGCAATGGTGGTTTTGAATAGTTTAGCTGGGATTGATGAAGGAAAAGAGGCTATTGTAGAAGGAGGAGGAATTGCAGCACTTGTGGAAGCAATTGAAGATGGATCAGTGAAAGGCAAGGAGTTTGCTGTGTTGACATTGTTGCAGTTGTGTGTTGATAGTATGAGAAACAGAGGGTTGTTGGTTAGAGAAGGAGCAATACCTCCATTGGTTGCGCTTTCACAGGCCGGCAGTGTTCGAGCTAAGCATAAGGCAGAGAGGCTGCTGGGGTACTTGAGAGAACTGAGGCAAGAAGCATCTTCTTCAAGTCCTTAG 1383 0.4722 MVFLEDSRSNSSRFPVPRNYYSPSSSSTRISRSIGRSMRTVRSTLFQDDHTCSFTTATEKSGCVSENLTDSVVDMRLGELASKTNKSAQSSCTEEDFLDLSQAFSDFSACSSDISGELQRLACLPNSENVEGNDGGEVKMEVEQEPEPCLGFLQRENFSTEIMESISPEDLQPTVKICIDGLQSSSVAVKRSAAAKLRLLAKNRADNRALIGESGAIPVLIPLLRCTDPWTQEHAVTALLNLSLHEDNKMVITNAGAIKSFVYVLKTGTETSKQNAACALLSLSLVEENKSSIGACGAIPPLVALLLNGSNRGKKDALTTLYKLCSIKSNKGRAVSAGAVKPLVALVAEQATSLADKAMVVLNSLAGIDEGKEAIVEGGGIAALVEAIEDGSVKGKEFAVLTLLQLCVDSMRNRGLLVREGAIPPLVALSQAGSVRAKHKAERLLGYLRELRQEASSSSP* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00294 460 FunFam U-box domain-containing protein 4 161 313 - -
Pte5g00294 460 Gene3D - 316 459 IPR011989 -
Pte5g00294 460 SUPERFAMILY ARM repeat 172 448 IPR016024 -
Pte5g00294 460 MobiDBLite consensus disorder prediction 1 33 - -
Pte5g00294 460 Pfam Armadillo/beta-catenin-like repeat 206 243 IPR000225 GO:0005515
Pte5g00294 460 Pfam Armadillo/beta-catenin-like repeat 288 326 IPR000225 GO:0005515
Pte5g00294 460 Gene3D - 156 315 IPR011989 -
Pte5g00294 460 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 215 257 IPR000225 GO:0005515
Pte5g00294 460 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 338 380 IPR000225 GO:0005515
Pte5g00294 460 SMART arm_5 409 450 IPR000225 GO:0005515
Pte5g00294 460 SMART arm_5 368 408 IPR000225 GO:0005515
Pte5g00294 460 SMART arm_5 204 244 IPR000225 GO:0005515
Pte5g00294 460 SMART arm_5 245 285 IPR000225 GO:0005515
Pte5g00294 460 SMART arm_5 286 326 IPR000225 GO:0005515
Pte5g00294 460 FunFam U-box domain-containing protein 4 314 455 - -
Pte5g00294 460 PANTHER U BOX DOMAIN-CONTAINING 127 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00294 Pte-Chr5 2794114 2797587 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00294 170 453 U-box Gene Family AT2G23140 50.704 4.73e-82 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00294 - - qsa:O6P43_031331 722.235