Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00267 ATGAAAGGTGTTGTTGGTTCTAATGGCACTTGTTGTACGATGGGTTTTGGAGAAAGTGGTAGTGGACTATGTCCACTGACGATGATGATGCCAATGCCTTTACCTTTAGTGACATCTCGTTTTGCTGGTCATGATCATCATTTTAACCCCATACATAATCTTAATGATTGTAATGCAGACACGCATAGATCCCTTCTTCTACTTCCTTCTTCAAATAGTAGTAACGATCACAACAATCAAAATAACCACAACATTCAAAACCTCAGTGGTACAGGTTTAGGTTCTTACTTCATGGAGAACAACAACCACAACCACAACAGCAGCAGTGCTTGCTCTTCTTCTGTCAAGGCCAAGATTATGGCTCATCCTCACTACCCTCGTCTCTTGACCGCTTATGCTAGTTGTCAAAAGGTTGGAGCACCGCCTGAAGTGGTAGCTAAGTTAGAAGAAGTATCCGCTACGATGTCTGGCCAAGCTGGTGCTGGTTGTTTAGGTCAAGATCCAGCTCTCGATCAGTTCATGGAAGCTTACAGTGAGATGCTGATTAAATACGAGCAAGAGCTCTCTAAGCCTTTCAAAGAGGCCATGCTCTATTTCCAAAGGATCGAGTGTCAGTTTAAAGCTCTCACACTTGCCTCTCCCAACTCTGCATGTAATGAGATTGCTGGTAGGGCTGTCTCATTTGAAGATGATGTTGATGCACACGACCACCTCATAGACCCCCAGGCAGAAGACCAGGAGATTAAGGGTAAGCTGCTGCGAAAATACAGTGGATATTTGGGCAGTCTTAAGCAGGAGTTCATGAAGAAGAGAAAGAAAGGGAAACTTCCAAAGGAAGCGAGACAACAATTGTTGGAGTGGTGGAGCAGACACTACAAATGGCCTTATCCATCGGAACCACAGAAGTTGGCTCTTGCAGAATCCACTGGTCTGGATCAGAAGCAAATAAACAACTGGTTCATAAATCAGAGGAAGAGACACTGGAAACCCTCAGAAGACATGCAGTTTGTTGTGATGGATGCTGCTGCTCATCCCCATTATTACATGGACAATGTCTGGGGCAATCCTTTTCCTACAGATCTCTCTTCTGCGCTCGTGTGA 1101 0.446 MKGVVGSNGTCCTMGFGESGSGLCPLTMMMPMPLPLVTSRFAGHDHHFNPIHNLNDCNADTHRSLLLLPSSNSSNDHNNQNNHNIQNLSGTGLGSYFMENNNHNHNSSSACSSSVKAKIMAHPHYPRLLTAYASCQKVGAPPEVVAKLEEVSATMSGQAGAGCLGQDPALDQFMEAYSEMLIKYEQELSKPFKEAMLYFQRIECQFKALTLASPNSACNEIAGRAVSFEDDVDAHDHLIDPQAEDQEIKGKLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDAAAHPHYYMDNVWGNPFPTDLSSALV* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00267 366 ProSiteProfiles ELK domain profile. 247 267 IPR005539 GO:0003677
Pte5g00267 366 Pfam ELK domain 247 268 IPR005539 GO:0003677
Pte5g00267 366 CDD homeodomain 279 331 IPR001356 GO:0003677
Pte5g00267 366 SMART KNOX1_2 113 157 IPR005540 GO:0003677|GO:0005634
Pte5g00267 366 SMART KNOX2_2 160 211 IPR005541 GO:0003677|GO:0005634
Pte5g00267 366 Pfam Homeobox KN domain 287 326 IPR008422 GO:0003677|GO:0006355
Pte5g00267 366 SMART HOX_1 269 334 IPR001356 GO:0003677
Pte5g00267 366 SUPERFAMILY Homeodomain-like 269 345 IPR009057 -
Pte5g00267 366 SMART ELK_2 247 268 IPR005539 GO:0003677
Pte5g00267 366 Pfam KNOX1 domain 115 153 IPR005540 GO:0003677|GO:0005634
Pte5g00267 366 Pfam KNOX2 domain 164 210 IPR005541 GO:0003677|GO:0005634
Pte5g00267 366 Gene3D - 272 334 - -
Pte5g00267 366 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 72 336 - -
Pte5g00267 366 FunFam Homeobox protein knotted-1-like 2 272 334 - -
Pte5g00267 366 ProSiteProfiles 'Homeobox' domain profile. 267 330 IPR001356 GO:0003677
Pte5g00267 366 ProSitePatterns 'Homeobox' domain signature. 305 328 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00267 Pte-Chr5 2616575 2621106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00267 115 367 Homeobox Transcription Factor Family AT1G62360 73.384 4.63e-121 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Pte5g00267 KNOX2 2.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00267 - - qsa:O6P43_031286 454.521