Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00264 ATGGCCAAAAACAGAACAGGAAGAAAGGACTTGCCATTCTGTACTATTAAAGGTACCAACAAAATTGTTAGAGCTGGGGACTGTGTACTCATGCGTCCAGTGGACACAACTAAGCCTCCATACGTTGCCCGTGTTGAGAAGATTGAAGCAGATAGTAGGAACAACATGAAGGTCCGTGTGAGGTGGTATTATCGGCCAGAAGAGTCTCTAGGTGGACGGAGGCAATTTCATGGAGCTAAGGAACTGTTCCTGTCAGACCACTATGATGTACAGAGTGCTCGGACTATTGAAGGAAAATGCATAGTGCATTCTTTTAAGAACTATACTAAGCTTGATAATGTTGGACCTGAAGATTACTATTGTAGATTTGAGTACAAGGCTGCTACCGGGACTTTCTCTCCCGACCGGGTTGCTGTGTATTGCATTTGCGAGATGCCTTATAACCCTGATGATCTCATGGTTCAATGTGAAGGGTGCACCGATTGGTACCATCCTGCCTGTGTGGGAATGAGCATTGAGCAAGCAAAGAAACTGGACCGTTTCTTGTGCTCCGATTGTACATCTGATGAGGATATTAGGAAATCTCAGAATACAAGTATAGGCCCAGTAGCTGCTGATGACAAGGTCGGGCAGCTCAAGCGCAGGAAGACGTGA 654 0.4572 MAKNRTGRKDLPFCTIKGTNKIVRAGDCVLMRPVDTTKPPYVARVEKIEADSRNNMKVRVRWYYRPEESLGGRRQFHGAKELFLSDHYDVQSARTIEGKCIVHSFKNYTKLDNVGPEDYYCRFEYKAATGTFSPDRVAVYCICEMPYNPDDLMVQCEGCTDWYHPACVGMSIEQAKKLDRFLCSDCTSDEDIRKSQNTSIGPVAADDKVGQLKRRKT* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00264 217 MobiDBLite consensus disorder prediction 192 217 - -
Pte5g00264 217 SUPERFAMILY FYVE/PHD zinc finger 132 190 IPR011011 -
Pte5g00264 217 ProSiteProfiles BAH domain profile. 21 136 IPR001025 GO:0003682
Pte5g00264 217 FunFam Chromatin remodeling protein EBS 1 132 - -
Pte5g00264 217 SMART PHD_3 140 187 IPR001965 -
Pte5g00264 217 ProSitePatterns Zinc finger PHD-type signature. 141 186 IPR019786 -
Pte5g00264 217 CDD BAH_BAHCC1 22 156 - -
Pte5g00264 217 Pfam BAH domain 23 135 IPR001025 GO:0003682
Pte5g00264 217 ProSiteProfiles Zinc finger PHD-type profile. 138 189 IPR019787 -
Pte5g00264 217 PANTHER OS08G0421900 PROTEIN 3 202 - -
Pte5g00264 217 Gene3D - 3 132 IPR043151 -
Pte5g00264 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 201 IPR013083 -
Pte5g00264 217 Pfam PHD-finger 140 188 IPR019787 -
Pte5g00264 217 FunFam Bromo-adjacent homology (BAH) domain-containing protein 133 202 - -
Pte5g00264 217 SMART BAH_4 21 136 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00264 Pte-Chr5 2571145 2573495 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00264 41 138 Core DNA Replication Machinery Family AT4G14700 30.303 2.41e-09 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pte5g00264 BAH 1.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00264 K25868 - zju:107419923 373.629