Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00224 ATGATGCATGCAGGAGGACCCGGTATGCCGCCGACACAACAAATGGTTCAGCAACCAACCTTGCAATACCAACAGCAGCAGCCACCATACATGATGATGCAGCCACAGCAACAGCAGCCTATGTGGGGTCACGTGCCTCCACAACAGGCACATCCCGTCCCACTCACTGATATGGCTCAACCCACTGGCGTCGATGAGATCCGTACCCTTTGGATCGGTGATTTGCAGGGTTGGATGAATGAGCGCTATCTTTTCGATTGTTTCTCTCCTGCTGCTGAGGTTGCTAATGTGAAAATCATCAGGAATAAGCTGACAGGAAATTCAGAGGGTTACGGATTTATTGAGTTCAGTTCACGTGCTGCTGCCGAAATGATACTGCAGCAGTACAATGGTGCCATAATGCCTCAGGCAGGGGTGAGCTACAGATTAAACTGGGCAAGTGCTGGAGAGAAGCGAAATGACGACGCCCCAGATTATACAATCTTTGTGGGCGACCTGGCTACTGATGTCAACGATGTTCTGCTGGAACAGACCTTCAAGGGCCGTTATACATCAGTCAAGAGTGCCAAGGTTGTGATTGATAGGGTTACCAATCGCTCAAAGGGTTATGGGTTTGTTAAGTTTGCTGACGAGAGTGAACAGTTAAGAGCCATGAGTGAGATGAATGGTGTTCTCTGTTCTACAAGGCCAATGCGCATTGGGCCTGCATCAAACAAGAATACAACTGGTCAGCAGCCTAGAGCTTCATACCAGAATCCAGGGACACAGAACGACTATGATCCAAATAACACTACTATATTTGTTGGCAACTTAGATCCTAATGTTACTGATGATCTTTTGAGGCAAGTCTTTGGCCGACATGGGGATTTAATACATGTGAAGATTCCAGCAGGCAAGCGATGTGGGTTCGTCCAATTCGCTGACAGAGGTGCTGCTGAAGAAGCGCTGCAGGTTTTGAATGGAGCCACTTTGGGTGGATCAAATGTGAGACTGTCTTGGGGTCGTAGCCTTACCAATAGACAGCAGGCACAGCCGGATCAAAACCAGTGGAATGGTGCTGGATATTATGGATATCCTACTCAGGGCTATGAGGGTTATGGTTACGCACCTGCTGCTCAGGATCCTAACATTGCGAAGAACATCAAGGGCAAAGGTGTTTTAAATGAAACGTCCGTTTCTTTTCACTGTGTGATTAGCGCCTCCGTTGATGCAAACAGCCACAGTGGCACACACCTCAAATTGGAGGAGTGGAAAGACTCTAAATTCATCCTTGCATTCATTGAGTGGAGGCCCAATTCTCTGGCTTGGATTGTCCTTTGCTTTTTTGATACCTGCCAACACGTGGAGTTTGACTTACAATAG 1362 0.4765 MMHAGGPGMPPTQQMVQQPTLQYQQQQPPYMMMQPQQQQPMWGHVPPQQAHPVPLTDMAQPTGVDEIRTLWIGDLQGWMNERYLFDCFSPAAEVANVKIIRNKLTGNSEGYGFIEFSSRAAAEMILQQYNGAIMPQAGVSYRLNWASAGEKRNDDAPDYTIFVGDLATDVNDVLLEQTFKGRYTSVKSAKVVIDRVTNRSKGYGFVKFADESEQLRAMSEMNGVLCSTRPMRIGPASNKNTTGQQPRASYQNPGTQNDYDPNNTTIFVGNLDPNVTDDLLRQVFGRHGDLIHVKIPAGKRCGFVQFADRGAAEEALQVLNGATLGGSNVRLSWGRSLTNRQQAQPDQNQWNGAGYYGYPTQGYEGYGYAPAAQDPNIAKNIKGKGVLNETSVSFHCVISASVDANSHSGTHLKLEEWKDSKFILAFIEWRPNSLAWIVLCFFDTCQHVEFDLQ* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00224 453 FunFam polyadenylate-binding protein RBP45 247 344 - -
Pte5g00224 453 MobiDBLite consensus disorder prediction 1 22 - -
Pte5g00224 453 MobiDBLite consensus disorder prediction 228 263 - -
Pte5g00224 453 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 159 238 IPR000504 GO:0003723
Pte5g00224 453 SUPERFAMILY RNA-binding domain, RBD 35 150 IPR035979 GO:0003676
Pte5g00224 453 CDD RRM1_SECp43_like 69 149 - -
Pte5g00224 453 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 134 IPR000504 GO:0003723
Pte5g00224 453 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 266 329 IPR000504 GO:0003723
Pte5g00224 453 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 161 224 IPR000504 GO:0003723
Pte5g00224 453 FunFam Polyadenylate-binding protein RBP47B 67 147 - -
Pte5g00224 453 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 148 IPR000504 GO:0003723
Pte5g00224 453 Gene3D - 11 156 IPR012677 -
Pte5g00224 453 SUPERFAMILY RNA-binding domain, RBD 152 254 IPR035979 GO:0003676
Pte5g00224 453 Gene3D - 241 344 IPR012677 -
Pte5g00224 453 SMART rrm1_1 265 332 IPR000504 GO:0003723
Pte5g00224 453 SMART rrm1_1 69 142 IPR000504 GO:0003723
Pte5g00224 453 SMART rrm1_1 160 234 IPR000504 GO:0003723
Pte5g00224 453 SUPERFAMILY RNA-binding domain, RBD 249 364 IPR035979 GO:0003676
Pte5g00224 453 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 264 336 IPR000504 GO:0003723
Pte5g00224 453 MobiDBLite consensus disorder prediction 233 263 - -
Pte5g00224 453 FunFam Polyadenylate-binding protein RBP45C 149 243 - -
Pte5g00224 453 CDD RRM2_SECp43_like 158 237 - -
Pte5g00224 453 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 59 340 - -
Pte5g00224 453 Gene3D - 158 234 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00224 Pte-Chr5 2285429 2289554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00224 69 342 Eukaryotic Initiation Factors Gene Family AT1G71770 27.957 6.28e-28 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00224 - - aprc:113864230 497.664