Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00213 ATGGATACAGAAAGGTTGTTTGTTTCTCGAGAAAACCCTAGGCCGCTTGCGTTTCCGACTGGGCTTGTTGTGAATTCAACGGAGACGACGGCGACGGGTGTGAAATCCATGCCCAATGACATCGCTCAGAAACCTACTTCTGTATTACTCGATAGATTTAGAGCTTTGTTGAGGCAGAGAGAAGATAAACTGAGGATTTCCTGCGGGGAAGACGTTCCACCGCCTACTACCGACGAAATTGTACAGCTTTATGAGTTGGTCTTATCGGAACTTACCTTCAACTCAAAACCTATCATTACAGATCTTACCATCATTGCTGGAGAGCAAAGGGAACACGCCAGAGGCATTGCTGACGCGATTTGCTCAAGGATTCTTGAGGTCTCTGCTGATCAGAAATTGCCTTCACTCTATCTGTTGGACAGTATTGTGAAGAACATTGGCAGGGATTATGTTCAATTCTTCGCTTTACACCTACCTGAAGCATTCTGTGAGGCATACAGGCAAGTTCAACCTAATTTACATAATTCTATGCGCCATCTTTTTGGAACCTGGTCGGCTGTATTTCCTCCCTCAATCCTTCGGAAAATTCAAGCACAGCTGCAATCGTCTCAAACTGTGAGCAATCCATCTGCATTGACTGACGTGAGGGCTTCTGAATCTCATCGAACAACTCATGGCATACATGTAAACCCAAAATACGTGCGGCAGTTTGAACAAATAAATGCTGATAATATTGGAGCTGAAAGATTGAATTCAAAAAGATCTATTGTCCATGGAAACTCTAGCCTTGGGTCAAGTAAGATTCATCCATCTTCATCTGTCAGGCTTAGAAGGTCTACTTCACCTTCTAGAATTGGAGTGGAGAGGTCTTCATTATCATCCTTTGATGAATCTACACTTGACAATTCTAGCAGGATCATTAAGGGTGAAGGACCATCTCAGTCTGCATTTGATTATGGAATTGGCAATCCAATTGTTTATGATGAGGAGTTTCCTGAATGGCCAAGGAAACAATTTAATGATGATAGCCGTAGCAAAGTTGAATTTTCTACCACCTATAACCCTACGAATGGACATGAGCCTCAAAGTCCTAGATCACTTATCCAAGCATATGGAAGTGACAGAAGGGCAGAAACTCTGAGTAATAGGAATTTGATGGTAGAACAGATGGATGCAAATGGTACAGACAAGATGGTCACTCAGAATTCGTGGAAACATTCAGAAGAGGAGGAGTTTGACTGGGAAGATATGAGCCCAACATTAGTGGACCATGCCAGGAATACTGATTACTTGTCTTCATATCGCTCTTTTCGTCCAATCCCTGGCCAACTGTCCTCCTTCGCAGCAGTGGATGCAGCCACTTTGGAGCTGGATGGAAGGAACACTAGGTCTAGCCCAGCTCGATTACTGCCTCTGGATGATTTGTCAAATGCTGCTGATGAATTGTATGGTCATGATTATGGATCGGCAAGTAATTCAGCAGGGCTGCAGTCCAAGAAAACCCAAACCAATGGTTCTCACCACCTTCATGATACCTGGAATTCGCCATATAATCTTCTCCAATCTTCACAATATTTGCTTCCTGGTAAGGGAAGAGGAAGAAGCCTCCGTTCTCTTCCTGTTGAGAACCTTCCCAGAGCTGAGGTAAATCCTTACAGACACTCAGCTTTTGGTTCAAGAATCAGTTCTACTGGTCACGATTCTGTTATCTTGGATGCTTGGTCTTCTGCTTTTCCATCAACATCTTCGAGAAGGCCTCCTGGCATTGGGCATACTATTCGTCCACCAACAGCAAATCCTTGTTTTCCTTTTCAAAAAAATGTCAGGAATCAGTTAAATGCTATAAATGCTACTAATATTGTGAATCAGGGCCCTGTCAAGTCCTTATTATTGCCTGAGCAGCAGTTAGAGAGTTCTGAGAACAAGGACTTGAGCATGACAAAGCCACCTCTATTGCCTAGTCAGCACCTTGGACAGAGGACGATGAACAAGCGAGAATTTGGAAGAGGTTCTGCATCAAGACTGCATTTCTCACCATCTGGGGGTGTTCAAGAAAATGTTCTGCAGGCTGCACCTGGTCCACTTGCAGCTTCCTTTACTCCTCTTTCTTCACATGGGCATGGTCCTTCTCTTAGTCCTCAGGGACCCTTACCAACAAATCATCTAGTTCCTCCCGTTTCATCACAAACGGTACTTCAGCAAAATGCTGGTCCCATTTTGCCTATCCAACCACCAAATATCTCTGCAATTGTTAATTCCCTTATGGCTACTGGTGTCCTTTCTTTGCCAAATCAAACATCTGTACAGGATTCTCTTGGAACTGACTTCAATCCTGATGTCCTTAAAGTTCGTCATGATTCAGCAATTTGCTCCTTATACTATGATCTCCCAAGACAATGCACAACCTGTGGCCTTCGATTCAAGTGTCAAGAGGAGCACAGCAGTCATATGGATTGGCATGTTACTCGGAACCGGATGTCCAAGAACCGTAAACAGAAGTCATCTCGTAAGTGGTTTGTGAACCAGGGGATGTGGCTTAGTGGTGCTGAGGCTCTTGGAACTGAAGCTGTCCCTGGATTTTTGTCGCCAGAGACAGTGGAGGAAAAGAAAGACGATGAAGAGATGGCTGTTCCTGCTGAGGAGGAGCACAATGTATGTGCATTGTGTGGGGAGCCTTTTGAGGAATTCTACAGTGATGAAAGTGAGGAGTGGATGTATAAAGGGGCTGTTTACTTACATTCATCTGAGGGGTCAACAGGTGGCGTGGATAGGTCACTGTTAGGTCCTATTGTTCATGCAAAATGCAGATCTGAGTCCAGTGGTGTTCCCTCTGAAGATTTTAGACCGGATGAAGGGGGATCCCGTGGACATTCTCGAGAGTTCATGGCATCGCTGCGGGCATTCCCTATCATTATGAACACGCAGTTCATTCAAATGGACGAATGTGCTAGACTATATCGAGAAGAGTGTGACTGCTCGATTCACTTTAATTTTGTAATCTTGTTACCGTAG 3012 0.4436 MDTERLFVSRENPRPLAFPTGLVVNSTETTATGVKSMPNDIAQKPTSVLLDRFRALLRQREDKLRISCGEDVPPPTTDEIVQLYELVLSELTFNSKPIITDLTIIAGEQREHARGIADAICSRILEVSADQKLPSLYLLDSIVKNIGRDYVQFFALHLPEAFCEAYRQVQPNLHNSMRHLFGTWSAVFPPSILRKIQAQLQSSQTVSNPSALTDVRASESHRTTHGIHVNPKYVRQFEQINADNIGAERLNSKRSIVHGNSSLGSSKIHPSSSVRLRRSTSPSRIGVERSSLSSFDESTLDNSSRIIKGEGPSQSAFDYGIGNPIVYDEEFPEWPRKQFNDDSRSKVEFSTTYNPTNGHEPQSPRSLIQAYGSDRRAETLSNRNLMVEQMDANGTDKMVTQNSWKHSEEEEFDWEDMSPTLVDHARNTDYLSSYRSFRPIPGQLSSFAAVDAATLELDGRNTRSSPARLLPLDDLSNAADELYGHDYGSASNSAGLQSKKTQTNGSHHLHDTWNSPYNLLQSSQYLLPGKGRGRSLRSLPVENLPRAEVNPYRHSAFGSRISSTGHDSVILDAWSSAFPSTSSRRPPGIGHTIRPPTANPCFPFQKNVRNQLNAINATNIVNQGPVKSLLLPEQQLESSENKDLSMTKPPLLPSQHLGQRTMNKREFGRGSASRLHFSPSGGVQENVLQAAPGPLAASFTPLSSHGHGPSLSPQGPLPTNHLVPPVSSQTVLQQNAGPILPIQPPNISAIVNSLMATGVLSLPNQTSVQDSLGTDFNPDVLKVRHDSAICSLYYDLPRQCTTCGLRFKCQEEHSSHMDWHVTRNRMSKNRKQKSSRKWFVNQGMWLSGAEALGTEAVPGFLSPETVEEKKDDEEMAVPAEEEHNVCALCGEPFEEFYSDESEEWMYKGAVYLHSSEGSTGGVDRSLLGPIVHAKCRSESSGVPSEDFRPDEGGSRGHSREFMASLRAFPIIMNTQFIQMDECARLYREECDCSIHFNFVILLP* 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00213 1003 SUPERFAMILY ENTH/VHS domain 76 202 IPR008942 -
Pte5g00213 1003 ProSiteProfiles CID domain profile. 76 204 IPR006569 -
Pte5g00213 1003 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 59 941 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Pte5g00213 1003 MobiDBLite consensus disorder prediction 939 956 - -
Pte5g00213 1003 MobiDBLite consensus disorder prediction 637 659 - -
Pte5g00213 1003 MobiDBLite consensus disorder prediction 257 310 - -
Pte5g00213 1003 MobiDBLite consensus disorder prediction 257 315 - -
Pte5g00213 1003 MobiDBLite consensus disorder prediction 937 956 - -
Pte5g00213 1003 MobiDBLite consensus disorder prediction 698 724 - -
Pte5g00213 1003 Pfam CID domain 88 195 IPR006569 -
Pte5g00213 1003 FunFam polyadenylation and cleavage factor homolog 4 73 201 - -
Pte5g00213 1003 CDD CID_Pcf11 81 202 IPR047415 -
Pte5g00213 1003 SMART 558neu5 79 201 IPR006569 -
Pte5g00213 1003 Gene3D - 74 202 IPR008942 -
Pte5g00213 1003 MobiDBLite consensus disorder prediction 703 724 - -
Pte5g00213 1003 ProSitePatterns Zinc finger C2H2 type domain signature. 800 820 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00213 Pte-Chr5 2216411 2223779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00213 691 941 C2H2 Transcription Factor Family AT4G04885 60.156 2.83e-92 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00213 K14400 - qsa:O6P43_011889 952.199