Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00200 ATGTCTACCCAAGAGTTCTTGCAATTTGATTTACTAACCGTCAGAGAGGCTACAAGCAACTTTGCGATTGAGAACAAATTAGGTGAAGGAGGTTTTGGTGAAGTTTACAAGGGTACCCTTCCTAATGGACAAGATATAGCTGTGAAGAGGCTTTCAAGAAGTTCAAGACAAGGTGCAGCAGAATTCAAGACAGAAGTTCTTTTGGTAGCCAAACTCCAACACAGGAATCTGGTGAGGTTATTGGGGTTTTGCTTAGAAGGAGAAGAGAAGCTGTTAGTATACGAATTGGTGCCTAACAAAAGTCTGGATCACCTTCTTTTTGACCCAGAAAAACGAGGACAACTGGACTGGTCAATAAGATACAAGATAGTAATAGGAATTGCCCGAGGAATGCTTTATCTTCATGAAGATTCCAGACTTCGAATCATACATCGTGATCTCAAGGCCAGCAATATATTGTTAGATGGGGATCTAAATCCAAAAATTTCTGACTTTGGTATGGCTAAGATCTTTGGTGTGGATCAAACTCAAGCAAATACAAGTAGAATTATGGGAACGTAG 561 0.4011 MSTQEFLQFDLLTVREATSNFAIENKLGEGGFGEVYKGTLPNGQDIAVKRLSRSSRQGAAEFKTEVLLVAKLQHRNLVRLLGFCLEGEEKLLVYELVPNKSLDHLLFDPEKRGQLDWSIRYKIVIGIARGMLYLHEDSRLRIIHRDLKASNILLDGDLNPKISDFGMAKIFGVDQTQANTSRIMGT* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00200 186 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672|GO:0006468
Pte5g00200 186 ProSiteProfiles Protein kinase domain profile. 21 186 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte5g00200 186 SMART serkin_6 21 184 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte5g00200 186 Gene3D Transferase(Phosphotransferase) domain 1 97 186 - -
Pte5g00200 186 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 4 186 - -
Pte5g00200 186 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 97 186 - -
Pte5g00200 186 FunFam Cysteine-rich receptor-like protein kinase 10 1 96 - -
Pte5g00200 186 Pfam Protein tyrosine and serine/threonine kinase 23 176 IPR001245 GO:0004672|GO:0006468
Pte5g00200 186 ProSitePatterns Protein kinases ATP-binding region signature. 27 49 IPR017441 GO:0005524
Pte5g00200 186 SUPERFAMILY Protein kinase-like (PK-like) 6 186 IPR011009 -
Pte5g00200 186 Gene3D Phosphorylase Kinase; domain 1 1 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00200 Pte-Chr5 2127592 2128369 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00200 1 186 Receptor kinase-like Gene Family AT4G23140 72.581 3.94e-95 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pte5g00200 PK_Tyr_Ser-Thr 3.8e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00200 - - vvi:100257888 305.064