Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00194 ATGGAGAGGAAAAGCCTGGGTCGCCAAAAGGTTAAGATGCAGAAGATGGAAAAAGAGAGCAACCTCCAAGTGACTTTCTCTAAGCGCAGATCTGGGCTGTTCAAGAAAGCAAGTGAACTCTGCACCCTGTGCGGTGCAGAGGTTGCCCTTGTTGTCTTCTCACCTGGAAGGAAGGTTTTCTCATTCGGCCACCCTAGCGTGGAGGCCATTGCTCAACGCTGTTTGGGTCAAAACTCCACCGGACCCACTTCGGACACCATGCAACTCATTGAGGGTCACCGCAATGCTCACATCCGTGCGCTCAATATGCAGCTGACCCAGCTCATGAACGAGCTGGAGGAAGAGAAGAAACGTGGTGAGGAGATGAACAAGATTATCAAAACAAATCAGGCTAACATATGGTGGCAGAAACCGATTGACGAGCTTAATAAGCAGCAGCTTGAACAGGTGAAGGGGTGCATGGAAAAGCTCCAGAAGGACGTGGCAACACAGGCTGAGAGACTTATGGTGGAGAACTCGTCTAAGCCTCAGGTCCAGTATTTCCATGGCAGCTCTTCCAATTCTGCTGCTGGGGCACCAGCAATGATGCTTTCTTCTGAGACAAACATGGCAACAACTCATGGTTATGGAAGCAACTATGGATCCTATGGACGCGGATTTATGTAA 666 0.497 MERKSLGRQKVKMQKMEKESNLQVTFSKRRSGLFKKASELCTLCGAEVALVVFSPGRKVFSFGHPSVEAIAQRCLGQNSTGPTSDTMQLIEGHRNAHIRALNMQLTQLMNELEEEKKRGEEMNKIIKTNQANIWWQKPIDELNKQQLEQVKGCMEKLQKDVATQAERLMVENSSKPQVQYFHGSSSNSAAGAPAMMLSSETNMATTHGYGSNYGSYGRGFM* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00194 221 CDD MADS_MEF2_like 7 73 IPR033896 GO:0000977|GO:0045944
Pte5g00194 221 SUPERFAMILY SRF-like 7 88 IPR036879 GO:0003677|GO:0046983
Pte5g00194 221 PRINTS MADS domain signature 8 28 IPR002100 GO:0003677|GO:0046983
Pte5g00194 221 PRINTS MADS domain signature 28 43 IPR002100 GO:0003677|GO:0046983
Pte5g00194 221 PRINTS MADS domain signature 43 64 IPR002100 GO:0003677|GO:0046983
Pte5g00194 221 SMART madsneu2 6 65 IPR002100 GO:0003677|GO:0046983
Pte5g00194 221 Gene3D - 19 85 IPR036879 GO:0003677|GO:0046983
Pte5g00194 221 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 15 62 IPR002100 GO:0003677|GO:0046983
Pte5g00194 221 FunFam Agamous-like MADS-box protein AGL62 18 84 - -
Pte5g00194 221 ProSiteProfiles MADS-box domain profile. 6 66 IPR002100 GO:0003677|GO:0046983
Pte5g00194 221 Coils Coil 95 129 - -
Pte5g00194 221 Gene3D - 86 188 - -
Pte5g00194 221 PANTHER MADS BOX PROTEIN 8 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00194 Pte-Chr5 2052594 2053259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00194 1 212 Type I MADS-box Gene Family AT5G60440 50.000 1.60e-65 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pte5g00194 SRF-TF 1.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00194 - - minc:123226858 235.343