Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00179 ATGGAGCAGTTAGAGGGTATTTCTGAAGGAGAGTGGAGCTATCTGAGTTCAATGTACACAGCAGAGGAGGCTGATTTTATGGCTCAATTGCTTACTAACTCTTGTATTCCCACTGAGAGTGAAGGAACTTTAGCTTTTGGGGTCCAATCACTTTGGCCTACCCATGAATCAAATTTAACAAATGCTGCAGGCAACAATCGCTGCTCTTATTATTCTACACATGGTGGTGATAGTACTAACTTTTCCAGCTTCACACAAGGGACTAGCTCTAGTGGCAGTCTTGAAGAGTACTTATTCAGTGACAATAACACAGTCGATGTCTTACTGACTGACAATGGAATCAGCTCATATATTGTTGATGGAAATGTAGAGGAGCCAGATCCTGATTACCAAGAGAAACCAGTTCTTCTAGATGAAAATTTCAAGCGAATTGCTGACTATGACACGCCTGTGCTTGAAGATTCTGCAAAAACTAAAAGCAACAAGGAGAGGTCTGCAAAAAGAGCAAGGTCTTCACTAGAGACACCAAAATGCAAGAGGAATGTGAAATCAAGAAAGAGTCCTAAGGCTTTTGTGATCAACAATGAGGAAGAGAATGCCGGCACTGGCAGGAAGAACTCAAGCGATTGCTGTTCAGAGGATGAACCCACTGCCTTTCAGGAGTTAAATGGTGGGAGCTCTTCAAGTTTAAGCCCGACAGAGGCTGCACCTACCAATTTGAATGTGAAAACTAGAGCCACTAGAGGTGCAGCTACGGATCCACAGAGCCTATATGCAAGGAAAAGAAGAGAAAGAATAAACGAAAGATTGAGAATCTTGCAGACCCTTGTCCCTAATGGAACCAAGGTTGACATGAGCACCATGCTTGAGGAAGCTGTCCAGTATGTAAAGTTTCTTCAGACACAAATTAAGCTCTTGAGCTCTGATGATTTGTGGATGTACGCCCCAATTGCTTACAATGGAATGGACGTAGGGCTTGACCTGAATATCATCCCACCAACAAAGCTACCATAG 1014 0.431 MEQLEGISEGEWSYLSSMYTAEEADFMAQLLTNSCIPTESEGTLAFGVQSLWPTHESNLTNAAGNNRCSYYSTHGGDSTNFSSFTQGTSSSGSLEEYLFSDNNTVDVLLTDNGISSYIVDGNVEEPDPDYQEKPVLLDENFKRIADYDTPVLEDSAKTKSNKERSAKRARSSLETPKCKRNVKSRKSPKAFVINNEEENAGTGRKNSSDCCSEDEPTAFQELNGGSSSSLSPTEAAPTNLNVKTRATRGAATDPQSLYARKRRERINERLRILQTLVPNGTKVDMSTMLEEAVQYVKFLQTQIKLLSSDDLWMYAPIAYNGMDVGLDLNIIPPTKLP* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00179 337 Pfam Helix-loop-helix DNA-binding domain 260 300 IPR011598 GO:0046983
Pte5g00179 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 250 299 IPR011598 GO:0046983
Pte5g00179 337 MobiDBLite consensus disorder prediction 152 252 - -
Pte5g00179 337 Gene3D - 252 308 IPR036638 GO:0046983
Pte5g00179 337 CDD bHLH_AtIND_like 251 313 - -
Pte5g00179 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 251 316 IPR036638 GO:0046983
Pte5g00179 337 MobiDBLite consensus disorder prediction 219 251 - -
Pte5g00179 337 FunFam Basic helix-loop-helix transcription factor 251 308 - -
Pte5g00179 337 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 82 323 - -
Pte5g00179 337 SMART finulus 256 305 IPR011598 GO:0046983
Pte5g00179 337 MobiDBLite consensus disorder prediction 152 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00179 Pte-Chr5 1927215 1928998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00179 10 335 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G14760 42.149 3.88e-60 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte5g00179 HLH 7.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00179 - - pop:7478655 283.108