Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte5g00178 ATGACGTCACCTCATCCGCCGGCTCTAGGACGAGAACTCTCAAATCCACCATCCGACGGCATCACTAATCTTCGTTTTTCCAACCACAGTGATCACCTGCTCGTTTCCTCTTGGGATAAGACGGCCCGGTTGTACGATGCAAGCGCCAATGCACTGAAAGGTGAGTTCATGCACGGAGGTGCTGTGCTCGATTGTTGCTTCCACGACGACTCTTCTGGATTCAGTGCTTGCCGTGACAATGCCGTCCGTCGCTTGGTTTTCAACTATAACAAGGAAGACATTTTGGGTAGGCACGATGCACCAGTACGATGTGTGGAATACTCTTATGCATCAGGTCAATTGATATCTGGAAGTTGGGACAAAACTTTGAAATGTTGGGATCCTAGGGGTGCAAGTGGGCAGGAAAGGACTCTCATTGGAATGTATCCACAACCTGAGCGTGTTTACTCTCTTTCTCTTGTCGGGAACCACTTAGTCGTGGCAACTGCAGGAAGACATGTCAATATCTATGACTTAAGAAATATGTCGCAACCTGAACAACGAAGGGAATCGTCATTGAAATATCAAACCAGATGCGTTCGCTGTTATCCAAATGGAACTGGATATGCCCTTAGTTCAGTGGAAGGGCGTGTTGCAATGGAATTCTTTGATACCTCTGAAACCAGTCAAGCAAAAAAGTACGCCTTTAAGTGTCACAGAAAATCTGAGGATGGGAGAGACATTGTGTACCCCGTGAATTCCATTGCATTCCACCCCATCTATGGGACATTTGCCACCGGCGGTTGTGATGGCTTTGTGAATGTGTGGGATGGAAACAACAAAAAGAGACTGTATCAGTACCCGAAGTACCCTTCTAGCGTTGCTGCACTTTCATTTAGTAGAGATGGCCGGCTGCTTGCCGTCGCATCAAGTTACACTTACGAAGAAGGAGATAAACCTCACGAACCGGATGCAATATTTGTTCGCAGTATAAATGAAGTGGAAGTCAAGCCAAAAGCCAAAGTGTACCCTAACCCTCCCACGTGA 1026 0.4698 MTSPHPPALGRELSNPPSDGITNLRFSNHSDHLLVSSWDKTARLYDASANALKGEFMHGGAVLDCCFHDDSSGFSACRDNAVRRLVFNYNKEDILGRHDAPVRCVEYSYASGQLISGSWDKTLKCWDPRGASGQERTLIGMYPQPERVYSLSLVGNHLVVATAGRHVNIYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDTSETSQAKKYAFKCHRKSEDGRDIVYPVNSIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYPKYPSSVAALSFSRDGRLLAVASSYTYEEGDKPHEPDAIFVRSINEVEVKPKAKVYPNPPT* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte5g00178 341 FunFam Mitotic checkpoint protein bub3, putative 7 334 - -
Pte5g00178 341 Pfam WD domain, G-beta repeat 95 127 IPR001680 GO:0005515
Pte5g00178 341 Pfam WD domain, G-beta repeat 19 46 IPR001680 GO:0005515
Pte5g00178 341 Pfam WD domain, G-beta repeat 229 270 IPR001680 GO:0005515
Pte5g00178 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 95 127 IPR001680 GO:0005515
Pte5g00178 341 PANTHER MRNA EXPORT FACTOR AND BUB3 12 326 - -
Pte5g00178 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 245 279 IPR001680 GO:0005515
Pte5g00178 341 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 95 127 - -
Pte5g00178 341 SMART WD40_4 273 308 IPR001680 GO:0005515
Pte5g00178 341 SMART WD40_4 88 127 IPR001680 GO:0005515
Pte5g00178 341 SMART WD40_4 135 171 IPR001680 GO:0005515
Pte5g00178 341 SMART WD40_4 49 86 IPR001680 GO:0005515
Pte5g00178 341 SMART WD40_4 6 46 IPR001680 GO:0005515
Pte5g00178 341 SMART WD40_4 222 270 IPR001680 GO:0005515
Pte5g00178 341 SUPERFAMILY WD40 repeat-like 16 304 IPR036322 GO:0005515
Pte5g00178 341 Gene3D - 5 335 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte5g00178 Pte-Chr5 1920166 1924537 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte5g00178 95 303 U-box Gene Family AT2G33340 23.364 9.90e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte5g00178 K02180 - qsa:O6P43_031121 650.973